PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019169980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 232aa MW: 25544.4 Da PI: 10.0647 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.8 | 4.5e-21 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 r + +sn vtfskRr g++KKA+ELS+LC++e+a+i+fs+ k++ + XP_019169980.1 15 RMSKESNLLVTFSKRRSGLFKKASELSTLCGVEIAIIVFSPGKKVFSF 62 567889999********************************9999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MARKCKGRQK IEMTRMSKES NLLVTFSKRR SGLFKKASEL STLCGVEIAI IVFSPGKKVF 60 SFGHPCVDAI VDRFLARSPA AAAAPTAAAT NTSQLIEAHR NASVRELNVQ LMEILNQFEV 120 EKKRGEELTK MRKENQGKWW WESPVAELRL EELEQLKVAM EELKSGVGKQ MEKLVVEASN 180 PNLYFGAPSS SSSSSKGFGL FDDAKASGLG LSVTPHHLHG FASFGYGGRG FF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-59 | M-type_MADS family protein |