PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169968.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 265aa    MW: 27867.5 Da    PI: 9.5839
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.94.6e-222065449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     n+ n qvtfskRr+g++KKA+ELS+LC++eva+++fs+  k++ +
  XP_019169968.1 20 TNENNLQVTFSKRRAGLFKKASELSTLCGVEVAIVVFSPGKKVFSF 65
                    58999**********************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MAAAARTSKG RQRVEMVKMT NENNLQVTFS KRRAGLFKKA SELSTLCGVE VAIVVFSPGK  60
KVFSFGHPSV EAVVEKFLGG DNSNPVGNEA GGVASPTEQL IEAHRSARLR ELSMELARLE  120
AMMESEKKRG EAIDEAVAAN REAQGWIRAS PDELNLQQLQ ALKNGMENLM VETHRKAQQV  180
MVAMHGNNGF PFNPYGAIIR GGSTSALGGV AAGALPLNGG VAAGAHPFTS GGAAGASSSS  240
YNVFTARGDA STSEGANLGI SRQFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-47M-type_MADS family protein