PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019169963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 625aa MW: 69885.6 Da PI: 6.8627 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.9 | 8.1e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kvlt sd++ +g +++ +++a+e+ + + + s++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD+++F + ++ XP_019169963.1 128 FCKVLTASDTSPHGGFSVLRRHATEClppldmN-EDTPSQDLVAKDLHGVKWHFKHIFRGRPKRHLLTTGWSTFVSSKRLVAGDSFLFL--RGDN 219 99****************************953.4456679************************************************..3489 PP E..EEEEE- CS B3 90 felvvkvfr 98 +el+v+v+r XP_019169963.1 220 GELRVGVRR 228 999****98 PP | |||||||
2 | Auxin_resp | 99.7 | 4.1e-33 | 254 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++++e+a+++ +svGmRfkm+fe eds+ rr++Gt+vgv+d+++ +W++S WrsLk XP_019169963.1 254 ASHAVTTQTLFVVYYKPRT--SQFIIGLDRYEEAINRGFSVGMRFKMRFEVEDSPDRRFMGTIVGVEDIST-QWKDSDWRSLK 333 689***************6..9**********************************************666.*********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 625 aa Download sequence |
MMMVDRTSSS SLRQHGNPSG KDDLYDDLWK LCAGPLVDVP RPDEWVYYFP QGHMEQLEAS 60 TNQAMDQRIS MFPLQSKILC RVLNIHLLAE RDTDEVYAQI TLMPEEQMKA TNPNPCPPEP 120 PSPKIHSFCK VLTASDTSPH GGFSVLRRHA TECLPPLDMN EDTPSQDLVA KDLHGVKWHF 180 KHIFRGRPKR HLLTTGWSTF VSSKRLVAGD SFLFLRGDNG ELRVGVRRLA TQQSSMPSSV 240 ISSQSMHLGV LATASHAVTT QTLFVVYYKP RTSQFIIGLD RYEEAINRGF SVGMRFKMRF 300 EVEDSPDRRF MGTIVGVEDI STQWKDSDWR SLKVQWDEPS PVAKPERVSP WEIEPLVPSI 360 PPSLAQPVAM KNKRPRLHSK PTVLEPLSKA SSDITQPNGT PQGQSDVSVT LLNGSPSCST 420 RSHTETVWPS NVKTSLSVFA DETEDSKTAS ARSVYSSQVP LQLGTASTCR LFGIDLKSTS 480 VVLVPEIPRI ACSGDLEQKS DNSVHSKDLK QEQQSLGRAK EGKNKLGYST RSRIKVQMQG 540 VAVGRAVDLT ALKGYDELID ELEEMFEIQG ELHPRKKWEI VFTDDEGDMM LMGDHPWLEF 600 CTVVRKILIC SSADVKKMSS GIEAM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | ARF family protein |