PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169962.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 625aa MW: 69885.6 Da PI: 6.8627

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.9	8.1e-23	128	228	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kvlt sd++ +g +++ +++a+e+ + + + s++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD+++F + ++ XP_019169962.1 128 FCKVLTASDTSPHGGFSVLRRHATEClppldmN-EDTPSQDLVAKDLHGVKWHFKHIFRGRPKRHLLTTGWSTFVSSKRLVAGDSFLFL--RGDN 219 99**************************953.4456679********************************************..3489 PP E..EEEEE- CS B3 90 felvvkvfr 98 +el+v+v+r XP_019169962.1 220 GELRVGVRR 228 999**98 PP
2	Auxin_resp	99.7	4.1e-33	254	333	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++++e+a+++ +svGmRfkm+fe eds+ rr++Gt+vgv+d+++ +W++S WrsLk XP_019169962.1 254 ASHAVTTQTLFVVYYKPRT--SQFIIGLDRYEEAINRGFSVGMRFKMRFEVEDSPDRRFMGTIVGVEDIST-QWKDSDWRSLK 333 689*************6..9******************************************666.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence
MMMVDRTSSS SLRQHGNPSG KDDLYDDLWK LCAGPLVDVP RPDEWVYYFP QGHMEQLEAS 60 TNQAMDQRIS MFPLQSKILC RVLNIHLLAE RDTDEVYAQI TLMPEEQMKA TNPNPCPPEP 120 PSPKIHSFCK VLTASDTSPH GGFSVLRRHA TECLPPLDMN EDTPSQDLVA KDLHGVKWHF 180 KHIFRGRPKR HLLTTGWSTF VSSKRLVAGD SFLFLRGDNG ELRVGVRRLA TQQSSMPSSV 240 ISSQSMHLGV LATASHAVTT QTLFVVYYKP RTSQFIIGLD RYEEAINRGF SVGMRFKMRF 300 EVEDSPDRRF MGTIVGVEDI STQWKDSDWR SLKVQWDEPS PVAKPERVSP WEIEPLVPSI 360 PPSLAQPVAM KNKRPRLHSK PTVLEPLSKA SSDITQPNGT PQGQSDVSVT LLNGSPSCST 420 RSHTETVWPS NVKTSLSVFA DETEDSKTAS ARSVYSSQVP LQLGTASTCR LFGIDLKSTS 480 VVLVPEIPRI ACSGDLEQKS DNSVHSKDLK QEQQSLGRAK EGKNKLGYST RSRIKVQMQG 540 VAVGRAVDLT ALKGYDELID ELEEMFEIQG ELHPRKKWEI VFTDDEGDMM LMGDHPWLEF 600 CTVVRKILIC SSADVKKMSS GIEAM

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence

MMMVDRTSSS SLRQHGNPSG KDDLYDDLWK LCAGPLVDVP RPDEWVYYFP QGHMEQLEAS  60
TNQAMDQRIS MFPLQSKILC RVLNIHLLAE RDTDEVYAQI TLMPEEQMKA TNPNPCPPEP  120
PSPKIHSFCK VLTASDTSPH GGFSVLRRHA TECLPPLDMN EDTPSQDLVA KDLHGVKWHF  180
KHIFRGRPKR HLLTTGWSTF VSSKRLVAGD SFLFLRGDNG ELRVGVRRLA TQQSSMPSSV  240
ISSQSMHLGV LATASHAVTT QTLFVVYYKP RTSQFIIGLD RYEEAINRGF SVGMRFKMRF  300
EVEDSPDRRF MGTIVGVEDI STQWKDSDWR SLKVQWDEPS PVAKPERVSP WEIEPLVPSI  360
PPSLAQPVAM KNKRPRLHSK PTVLEPLSKA SSDITQPNGT PQGQSDVSVT LLNGSPSCST  420
RSHTETVWPS NVKTSLSVFA DETEDSKTAS ARSVYSSQVP LQLGTASTCR LFGIDLKSTS  480
VVLVPEIPRI ACSGDLEQKS DNSVHSKDLK QEQQSLGRAK EGKNKLGYST RSRIKVQMQG  540
VAVGRAVDLT ALKGYDELID ELEEMFEIQG ELHPRKKWEI VFTDDEGDMM LMGDHPWLEF  600
CTVVRKILIC SSADVKKMSS GIEAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein