PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019169876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LSD | ||||||||
Protein Properties | Length: 175aa MW: 18345.2 Da PI: 8.3345 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.3 | 1e-12 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ XP_019169876.1 7 CNGCRTILLYPRGASNVCCAVCNA 30 **********************97 PP | |||||||
2 | zf-LSD1 | 46.9 | 4.4e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV XP_019169876.1 46 CGGCRTLLMHPRGATSVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 49 | 9.7e-16 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP GApsV+Ca+C+++ XP_019169876.1 84 CGNCRTMLMYPSGAPSVKCAVCHFI 108 ***********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MQSQVVCNGC RTILLYPRGA SNVCCAVCNA LTPVPPPAME MAQLICGGCR TLLMHPRGAT 60 SVRCSCCHTV NLVPGPNQFA HVNCGNCRTM LMYPSGAPSV KCAVCHFITN VNQAGDTRAP 120 IQPHTPNGTA TSSSMTPSST ATSRPQNQTV VVQNPMSVDE SGNLVRNVVV GVTTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 2e-59 | LSD family protein |