PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169796.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 852aa    MW: 94238.2 Da    PI: 6.8541
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23147248199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +++a+e+     ++ ++ s++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++
  XP_019169796.1 147 FCKTLTASDTSTHGGFSVLRRHADEClppldMSRQPPSQELVARDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENG 239
                     99*****************************444556679************************************************..44999 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     el+v+v+r+
  XP_019169796.1 240 ELLVGVRRT 248
                     9*****996 PP
2Auxin_resp117.51.1e-38273355183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t+++F+v+Y+Pr+s++eF+++ +++++++k+++s+GmRfkm+fe+e+++e++++Gt+vg++d+d  rWp+SkWr+Lk
  XP_019169796.1 273 AWHAIQTNTMFTVYYKPRTSPAEFIIPHDQYMESVKNNYSIGMRFKMRFEGEEAPEQKFTGTIVGIEDCDHQRWPESKWRCLK 355
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    
MATSEVTAAR GYAESSCGSC APPPDGGRSV SGAGKDVERA LYTELWRACA GPLVTVPREQ  60
ELVFYFPQGH IEQVEASTNQ VAEQQMPIYK LPWKILCRVV NVLLKAEADT DEVYAQVTLM  120
PEENQDENAI KKETVLPSPP HVQVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR  180
QPPSQELVAR DLHGSEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE  240
LLVGVRRTMR HQSNIPSSVI SSHSMHLGVL ATAWHAIQTN TMFTVYYKPR TSPAEFIIPH  300
DQYMESVKNN YSIGMRFKMR FEGEEAPEQK FTGTIVGIED CDHQRWPESK WRCLKVRWDE  360
TSTIPRPDRV SPWQIEPSLC PSALNPLPVP RSKRPRSNAF PSSPDSSVLT REGSSKLSVD  420
PSSASGFSRV LQGQELSTLR GAFAESKQSE SSEKPTPCPP SVNDEKLDDL YASHRCSSNK  480
RLSLGRPESS FTALLSSGFG MYINSSHGLS FQSGDQMPVP ASLVKRQTKC QEGEFNLLGK  540
PWPAVPSASG LSLNLMDSSS KPHGQGSDTP YQAPGDSRCG GLSEYSMLPG HRLDSQQGNW  600
FMPPTSYLQI PAHSRELMPK PVSVQQHEAF EPKKGNCKLF GIPLISNSSS MGPPMLSENA  660
MTESIVHSDL GISSHQSPAI ESEQRSEQPK DSKVINGVTG NEKEKELQTF HVGGRGRVGK  720
VCSGSTRSCT KVHKQGTALG RSVYLAKYNN YDELIAELDN LFDFNGELKA RNSNWMVVYT  780
DGEGDMMLVG DDPWQEFCAM VHKIHLYTKE EVQHMKPGTL TSKDEDTSSI AGLDTKEVKV  840
LLPPPKSSAE EC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein