PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019169239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28650.3 Da PI: 9.7759 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ XP_019169239.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 104.9 | 1e-34 | 93 | 189 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkk 97 +++ s +ea+++ +qqe++kL+++i+nLq+++R+++Ge+L+ +l++L++Le+++ek+++kiR+kKnell+++i+++qk+ e +l+++n++Lr+k XP_019169239.1 93 TNTGSISEANTQFYQQEANKLRQQISNLQNQNRNYMGEGLGGFNLRDLKNLESKIEKGISKIRAKKNELLFAEIDYMQKRqEIDLHNNNQYLRAK 187 3444599**********************************************************************9984679**********9 PP K-box 98 le 99 + XP_019169239.1 188 II 189 96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MEFQSDQSRE MSPQRKMGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNSVKA TIDRYKKACS DSTNTGSISE ANTQFYQQEA NKLRQQISNL 120 QNQNRNYMGE GLGGFNLRDL KNLESKIEKG ISKIRAKKNE LLFAEIDYMQ KRQEIDLHNN 180 NQYLRAKIIE TERAQQQQQQ MNLMPGSSSY HELAPPQQFD ARNYLQLDGF QSTSSYSKQD 240 HLPLQLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-113 | MIKC_MADS family protein |