PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019169000.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 658aa    MW: 74098.6 Da    PI: 6.0743
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019169000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.78.1e-22126226198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+e+       +++    ++l+ +d++ ++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F   + +
  XP_019169000.1 126 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQQP--PWQELVSTDLHANEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 216
                     99****************************964333..3458999*********************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_019169000.1 217 NGELRVGVRR 226
                     999*****97 PP
2Auxin_resp115.93.6e-38252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F+v+Y+Pr+s+seF+v+v+k+ +a ++k+svGmRfkm+fe+e+++err+sGt+vgv+d  ++rWp+SkWrsLk
  XP_019169000.1 252 ASHAINTGTLFSVFYRPRTSRSEFIVSVNKYIEAQNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVEDNTSSRWPDSKWRSLK 334
                     789******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    
MAHVVANQFR GAYPASSHDP LYKELWHACA GPLVTLPREG ERVYYFPQGH MEQLEASTHQ  60
GLDQQLPSFD LPAKILCKVM NVFLRAEPET DEVYAQITLL PEPEQSEITS PDPPLPEPEQ  120
CNVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSQQ PPWQELVSTD LHANEWHFRH  180
IFRGQPRRHL LTTGWSVFVS AKKLVAGDAF IFLRGENGEL RVGVRRLMRQ LNNMPSSVIS  240
SHSMHLGVLA TASHAINTGT LFSVFYRPRT SRSEFIVSVN KYIEAQNHKL SVGMRFKMRF  300
EGEEVPERRF SGTIVGVEDN TSSRWPDSKW RSLKVQWDEP SSIVRPDRVS PWEIEALVTS  360
TPQTLQPPQR NKRARPANLP PSVSEFSALG TWKSPVDSPQ LFSYCDTSRG TDLFPSPKLS  420
SGSMVNNLAY SENGSLPPVS SRSMCCSNQP ETDSTAPVSE KKQANGYRLF GIQLMDHSTV  480
RDTSLTRPQT MVEDCPVLCL DSESDQHSEP SNPSRSEVPE VSFEHEKSSL RSPVESQSKQ  540
IRSCTKVHMQ GKAVGRAVDL TRFEGYEDLL RKFEEMFEIE GELCGSIKKW QVVYTDDEDD  600
VMMVGDDPWH EFCSMVRKIN IYTIEEAKML SPKIKLPVNE VKSSKPVSDS SVGTEELV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0ARF family protein