PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019168786.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 431aa    MW: 46607.2 Da    PI: 10.2702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019168786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05200222223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+Cg++Fs ++  ++H  + H
  XP_019168786.1 200 TCPKCGEHFSKWDAVESHHLSkH 222
                     8*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MPAVWLSLKK SLQCRSEPAE VHDPSLGDDK NLSKKISIGT RSSRKTATVR SGCSRSIANL  60
RDVVIHGSRR YNNGETTPYL QSPRSIGSNE LLNPITHEVV LNNSTCELKI TSYSFQDGGG  120
GAAGAGGGWP FVQCTLKPGT PGPGRQYRKP GGVGGSSPTV KGSTGSLSRR VGAAGFSGIV  180
PSRPKASNGG PEFYGFKELT CPKCGEHFSK WDAVESHHLS KHAVTQLVEG DSSRNIVEMI  240
CRSSWTSSKP DKNNNNNNGN GMERILKVHN MQKTLARFEE YRETVKIKAS KLAKKHARCL  300
ADGNELLRFH GTTVECSLGK NSSSSLCNSE KCQVCQILRH GFRVKKGGVG VFTASTSRRA  360
LEAIEMKGGM KKALIVCRVI AGRVHKPVEN LQELSGFDSL AGKFGLHSSV EELFLLNPRA  420
LLPCFVVICR P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-133C2H2 family protein