PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168572.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 277aa MW: 29624.2 Da PI: 6.5034

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.7	2.5e-30	4	104	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +l+l++a pe+ r+++++sl+yeA+ r+ +P+yG++g+++++++ql+q+ XP_019168572.1 4 SCNGCRVLRKGCSEKCSIKPCLqwiksPDAQSNATVFLAKFYGRAGLLNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSAGLLWSGNWQLCQA 98 6********************************************************************************************** PP DUF260 91 kaelal 96 ++e++l XP_019168572.1 99 AVEAVL 104 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MRMSCNGCRV LRKGCSEKCS IKPCLQWIKS PDAQSNATVF LAKFYGRAGL LNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSAGLLWS GNWQLCQAAV EAVLGGAPIT KLSPDSAAFS 120 MSPSLKACDI RHVSKEDNAN AGAGAGDLHK VKSRGRFKRT AAGKPKQRAG SPDVDDAARV 180 MWSWSHKEEE DAVGSPSRDS GLSQHAEEQS RGGESGDANC ASGETVETSL AKPEDESDVE 240 LELTLGWEPM SRHWKSTPAG MSEDAGGSDE AACRMEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-86	LBD family protein