PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168512.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 392aa MW: 43906.1 Da PI: 6.1033

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	31.2	4.6e-10	18	61	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C ++ H+ H++v XP_019168512.1 18 ARACDSCLSKRARWFCVADDAFLCQSCDVSVHSAnllasrHQRV 61 578*****************************668888888876 PP
2	CCT	68.1	2.3e-23	331	374	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_019168512.1 331 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRS 374 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MMSSDQRKTA NAISGKTARA CDSCLSKRAR WFCVADDAFL CQSCDVSVHS ANLLASRHQR 60 VRLGTSSSST AAASLLSSPK IVDDDDDDSP PAWHRGFTRK PRTPRNAKRT KKQNSGGVAV 120 EESVNPVLPF VPEMGSDDDY NNNNEIDLFC QVPVLLDDDL NALLNDGGGD DHMRGLEIPE 180 FLSSDVELAE FAADVETLLG DDDVGEDKAT AAVKIEINGG DCTEALNWSF GEEQEVEQKV 240 MMTMLSGFDE SSSSMESGSC KEEVAKKSRM LLSLNYEEVI SAWASQGCPW TDGTRPHFDP 300 NHCWPDFMGG DHHHHHPYGS AMMMRRSDEG REARVSRYRE KRRTRLFSKK IRYEVRKLNA 360 EKRPRLKGRF VKRSSLFQPP PPFPNYLLNR HL

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MMSSDQRKTA NAISGKTARA CDSCLSKRAR WFCVADDAFL CQSCDVSVHS ANLLASRHQR  60
VRLGTSSSST AAASLLSSPK IVDDDDDDSP PAWHRGFTRK PRTPRNAKRT KKQNSGGVAV  120
EESVNPVLPF VPEMGSDDDY NNNNEIDLFC QVPVLLDDDL NALLNDGGGD DHMRGLEIPE  180
FLSSDVELAE FAADVETLLG DDDVGEDKAT AAVKIEINGG DCTEALNWSF GEEQEVEQKV  240
MMTMLSGFDE SSSSMESGSC KEEVAKKSRM LLSLNYEEVI SAWASQGCPW TDGTRPHFDP  300
NHCWPDFMGG DHHHHHPYGS AMMMRRSDEG REARVSRYRE KRRTRLFSKK IRYEVRKLNA  360
EKRPRLKGRF VKRSSLFQPP PPFPNYLLNR HL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	342	358	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-72	CO-like family protein