PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019168490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 372aa    MW: 40394.5 Da    PI: 8.6259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019168490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.2e-104975127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ + C ++ rtG C yG++C+F+H++
  XP_019168490.1 49 PGVPDCAYYIRTGLCGYGGKCRFNHPR 75
                    5789*********************96 PP

2zf-CCCH36.11.1e-1194120127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++++rtGtCk+ ++CkF+H++
  XP_019168490.1  94 PGEPTCQYYLRTGTCKFSASCKFHHPR 120
                     57899********************96 PP

3zf-CCCH30.56.2e-10141166227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+  +Ck++H++
  XP_019168490.1 141 DEKECSYYLKTGQCKFALTCKYHHPQ 166
                     6789********************97 PP

4zf-CCCH37.44.3e-12296322127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+G++C+++H+p
  XP_019168490.1 296 PGQPECQHYMKTGNCKFGSSCRYHHPP 322
                     5789*********************97 PP

5zf-CCCH32.91.1e-10345368427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C+f+++ G+Ck+G +CkF H++
  XP_019168490.1 345 QPCSFYLQKGFCKFGLSCKFDHPM 368
                     69********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MEMYGRSTIR NGSQPDTSAE WAPVGPETDL EESMQRLGLW GRERYPERPG VPDCAYYIRT  60
GLCGYGGKCR FNHPRDRCSV GAVQLGVGVY PERPGEPTCQ YYLRTGTCKF SASCKFHHPR  120
NAGGSLSNVS LNIYGYPLRP DEKECSYYLK TGQCKFALTC KYHHPQPAGV SGPAAARPFY  180
PTVQSLPGPS TEQYSGNSAN FRVTRPPLLP GSYLPSAYGP VLLHPGMVPV QNWSYSGPVS  240
PSLSPGAQPS NGLASVYGIS QMASSSTAFP GPYSPLLAST GPSSSAQNEK CFPERPGQPE  300
CQHYMKTGNC KFGSSCRYHH PPGWNSSNIN IASSPLGLPL RPGAQPCSFY LQKGFCKFGL  360
SCKFDHPMES TI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-158C3H family protein