PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168488.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 366aa MW: 40638.6 Da PI: 6.325

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.8e-32	198	253	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+e+mkv+gLt+++vkSHLQkYRl+ XP_019168488.1 198 KQRRCWSPELHKRFLQALQQLGGSHAATPKQIREMMKVDGLTNDEVKSHLQKYRLH 253 79****************************************************97 PP
2	Myb_DNA-binding	46	1.2e-14	200	251	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e+++++++a +qlGg t+k I ++m g+t ++ks++qky+ XP_019168488.1 200 RRCWSPELHKRFLQALQQLGGShaaTPKQIREMMKvDGLTNDEVKSHLQKYR 251 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MLINYPDNKT QKCRDYIQAL EEERRKIQVF RRELPLCLDL VTQAIESYKQ QLSGTTTEYN 60 LNGQSECSEQ TTSAAPVLEQ FIPMKSAQED DDEDYEEQSR KSDNDDDDHD DCVNKNNDNN 120 NSEKSDWLRS VQLWNQFPDP TPKEESPEEV KRNGSGGAFQ PFKKEKSGAA AAAQPPTAAS 180 STAETGRSKK EDKESQRKQR RCWSPELHKR FLQALQQLGG SHAATPKQIR EMMKVDGLTN 240 DEVKSHLQKY RLHTRRPSPS NRNNSIQQQA APQFVVVGGI WVPPAEYAAM AAAPAPAESK 300 EATTSNGIYA PVASLPPSSA FQGPSALNRR ACGFHERGSQ SNDGRVHSNS PATSSSTHTT 360 TASPPY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MLINYPDNKT QKCRDYIQAL EEERRKIQVF RRELPLCLDL VTQAIESYKQ QLSGTTTEYN  60
LNGQSECSEQ TTSAAPVLEQ FIPMKSAQED DDEDYEEQSR KSDNDDDDHD DCVNKNNDNN  120
NSEKSDWLRS VQLWNQFPDP TPKEESPEEV KRNGSGGAFQ PFKKEKSGAA AAAQPPTAAS  180
STAETGRSKK EDKESQRKQR RCWSPELHKR FLQALQQLGG SHAATPKQIR EMMKVDGLTN  240
DEVKSHLQKY RLHTRRPSPS NRNNSIQQQA APQFVVVGGI WVPPAEYAAM AAAPAPAESK  300
EATTSNGIYA PVASLPPSSA FQGPSALNRR ACGFHERGSQ SNDGRVHSNS PATSSSTHTT  360
TASPPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	4e-86	G2-like family protein