PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168422.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 438aa MW: 49944.5 Da PI: 5.341

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.1	1.8e-32	56	195	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....s 80 lp+G++F+P+d+e+v +L +k+ +++ + +e+i++vd i++++P++Lp +k + + +fF+++ k+y+tg+rk+r+++ + XP_019168422.1 56 LPRGVKFDPSDQEIV-WHLIAKIGAEDlqphpfI--DEFIPTVDedegICYTHPQNLP-GIKMDGSCSHFFHRAIKAYNTGTRKRRKIHgdnfgD 146 799**********.778899888886665332..334655544556******.666677888**************865555558 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k+vl +g ++g+kk++v+y ++ k+ekt+Wvmh+y+l XP_019168422.1 147 VRWHKTGRTKPVLL-DGVQKGCKKIMVLYvtPAKGDKPEKTNWVMHQYHL 195 88********.99********7734555666*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MARQAWLVDP NRLATKILSA SSDPKRTNWK SNPTKACPNC QYRIDNSDVT HEWPGLPRGV 60 KFDPSDQEIV WHLIAKIGAE DLQPHPFIDE FIPTVDEDEG ICYTHPQNLP GIKMDGSCSH 120 FFHRAIKAYN TGTRKRRKIH GDNFGDVRWH KTGRTKPVLL DGVQKGCKKI MVLYVTPAKG 180 DKPEKTNWVM HQYHLGTSED ERDGEYVISK VYYQQQQQVK HNEKSECQSP KGHECLTVKV 240 DPVTPKSVTP EPPLTERRFS SSDAVSSTPA AYSSSNIQHQ EVNYIEDHME TPFQKSGNHD 300 LITENQIDEM EVKNENENEA GDDPKWYEIG SQNIMDSQQL AEYISLCDEF ILSQSPNRED 360 QQNHKEKKCK ARLSDHYACL GAEVLKKDLE ECQDYELDQA NIILDTPPDF RLSQLDFPSQ 420 DSFVAFGGHK IGSEEQGD

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MARQAWLVDP NRLATKILSA SSDPKRTNWK SNPTKACPNC QYRIDNSDVT HEWPGLPRGV  60
KFDPSDQEIV WHLIAKIGAE DLQPHPFIDE FIPTVDEDEG ICYTHPQNLP GIKMDGSCSH  120
FFHRAIKAYN TGTRKRRKIH GDNFGDVRWH KTGRTKPVLL DGVQKGCKKI MVLYVTPAKG  180
DKPEKTNWVM HQYHLGTSED ERDGEYVISK VYYQQQQQVK HNEKSECQSP KGHECLTVKV  240
DPVTPKSVTP EPPLTERRFS SSDAVSSTPA AYSSSNIQHQ EVNYIEDHME TPFQKSGNHD  300
LITENQIDEM EVKNENENEA GDDPKWYEIG SQNIMDSQQL AEYISLCDEF ILSQSPNRED  360
QQNHKEKKCK ARLSDHYACL GAEVLKKDLE ECQDYELDQA NIILDTPPDF RLSQLDFPSQ  420
DSFVAFGGHK IGSEEQGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-159	NAC family protein