PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168125.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 656aa MW: 72840.2 Da PI: 10.2314

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.1	2.2e-09	12	45	2	36
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 +W+t+E++ll+ avk++G ++W+++a +++ +R+ XP_019168125.1 12 TSWSTWEELLLAFAVKRHGLKDWDSVAMELQ-NRC 45 68*****************************.998 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MLKGATETRK KTSWSTWEEL LLAFAVKRHG LKDWDSVAME LQNRCSIPAV ITAQICKDKY 60 HDLHRRFMNN DAAADGDAEA GRVGGGVGDA IAIPWLEELR QLRVAELKQE VHRYDLSIQS 120 LQLKVKRLEE REQSSKDVSV EPPDLEDDGK EQRSENDENN GGRETTSGKD VSFSCKDSDR 180 ENRSFNESNS TENRRTGEKL EPDSVPIKPD PEAKPVWEED SCNDSSDRHK ASKLKTDSEL 240 RDSVSESKEG TKDSSDVQSS ASLTERRRKR TNSVGGRVTT AAASPSPPAI STKRGGAVKP 300 EALVGLLDII RSHKHGQVFQ RRLDSQKTED YKKAIRRHVD LETVQARIDD GSYSSCSTRF 360 YLDLLLLFNN AIVFFPKSSP ESTAAFQLRD IAVKELKKKK EKEKNQTPSP EPVQQPKLEL 420 ERSDSLLAKH KSTAPIVVCR KRSSISGGKT ATSGNKQGKV SDEKAKPKPP LSQKLSSSSN 480 LDEDEDDSST KLKMKEKPVT GVRSTRRSSK GNPPKEEVAK TDKEEVITTT TDKKRGAADF 540 LKRMKKDSQG TVAAAVSVKN SSDDAKPSSR RREQQKRKQQ QATEERKDGP VRRSSGGAGG 600 RKEAAAAEES SLSKRNVGRP PKRGRDAAAA TPEKRGKETS VDKEESSKRP KKRTRR

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MLKGATETRK KTSWSTWEEL LLAFAVKRHG LKDWDSVAME LQNRCSIPAV ITAQICKDKY  60
HDLHRRFMNN DAAADGDAEA GRVGGGVGDA IAIPWLEELR QLRVAELKQE VHRYDLSIQS  120
LQLKVKRLEE REQSSKDVSV EPPDLEDDGK EQRSENDENN GGRETTSGKD VSFSCKDSDR  180
ENRSFNESNS TENRRTGEKL EPDSVPIKPD PEAKPVWEED SCNDSSDRHK ASKLKTDSEL  240
RDSVSESKEG TKDSSDVQSS ASLTERRRKR TNSVGGRVTT AAASPSPPAI STKRGGAVKP  300
EALVGLLDII RSHKHGQVFQ RRLDSQKTED YKKAIRRHVD LETVQARIDD GSYSSCSTRF  360
YLDLLLLFNN AIVFFPKSSP ESTAAFQLRD IAVKELKKKK EKEKNQTPSP EPVQQPKLEL  420
ERSDSLLAKH KSTAPIVVCR KRSSISGGKT ATSGNKQGKV SDEKAKPKPP LSQKLSSSSN  480
LDEDEDDSST KLKMKEKPVT GVRSTRRSSK GNPPKEEVAK TDKEEVITTT TDKKRGAADF  540
LKRMKKDSQG TVAAAVSVKN SSDDAKPSSR RREQQKRKQQ QATEERKDGP VRRSSGGAGG  600
RKEAAAAEES SLSKRNVGRP PKRGRDAAAA TPEKRGKETS VDKEESSKRP KKRTRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	648	656	KRPKKRTRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	9e-89	MYB_related family protein