PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019168077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 165aa MW: 18120.8 Da PI: 7.9237 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.7 | 6.8e-37 | 16 | 117 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lr+kC ++C++apyf ++q +fa+vhk+FG+sn +k+l +p ++r++a+ +l+yeA+ar+++PvyG+v++il+l+qq+ +l+ael XP_019168077.1 16 PCGACKFLRKKCIPSCIFAPYFDSDQgVTRFAAVHKVFGTSNATKILLCTPANRRHCAAITLCYEAQARLSNPVYGCVSTILALKQQVVSLQAEL 110 7*************************77******************************************************************* PP DUF260 95 allkeel 101 a++k+++ XP_019168077.1 111 AMVKTQI 117 **99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MDTYSETAGA VAIQAPCGAC KFLRKKCIPS CIFAPYFDSD QGVTRFAAVH KVFGTSNATK 60 ILLCTPANRR HCAAITLCYE AQARLSNPVY GCVSTILALK QQVVSLQAEL AMVKTQIMNS 120 RVAVENGVQT SQQQEEPTYF NLIGETTYSD SNCFDPIAFT NHMFR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 8e-58 | LBD family protein |