PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168045.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 601aa MW: 68132.1 Da PI: 7.6501

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168045.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.6	5.6e-15	47	126	2	76
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkw 76 +Y++Y + +GF+v+ks+ k+ + g i k+++vC++eg+++ + ++ t++++r+r+++r+gC ak++ ++++ g++ XP_019168045.1 47 YYKTYTSVTGFDVCKSSDIKN-KYGIILKKKLVCNREGFKDAKPNNpseqntTTQTKRRRPSNRVGCMAKIVFRRDSAGRY 126 8**************9998.7777************99999999999999****************9997665 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MEEGEKRQHC VMDESQNGTN IWVTACDPSI KPAVDQVFST LEDDFAYYKT YTSVTGFDVC 60 KSSDIKNKYG IILKKKLVCN REGFKDAKPN NPSEQNTTTQ TKRRRPSNRV GCMAKIVFRR 120 DSAGRYWPPT IHRDCSKVNI GASKSHDLYA EMVGGVENVG ATQQDFKNYR REILVYMQGG 180 DAQMLISKYL DLKSDYDDMY FEYEANENDQ LACVFWADGM ARKQYSVFRD VVSFDATYKT 240 NRYSLVFVPF TGIDHHKKCV TFAAALIARE DVDSYCWILR NFKNVMGSTP PLTVTDQDPA 300 MKVAIAREFP ETSHRYCMWH IMAKVGDKVS PELAKNEAFR RELNDVVWND SLTTAKFEVA 360 WKGVIQKFGL MENPWLNRMY DERASWIPAC FEGVFMGGLK EICAGCFECR VRAVAHGEAG 420 NTYEVEDEHE IRYTVFVENG TRTTTCECRM YNRIGLLCSH AFAVLIYDRN GDIPRNISPP 480 RWTRTALTNS PIKTCNDTLQ RGNHTARGNK EESNVLNTLY RCIAMAQGDV TKLEQISNAL 540 KEIESTWCTN GEDGGVVDKG KRSIKETFCG APTPDSITVH PPAVSSTKGS GKRMRTAKES 600 Q

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MEEGEKRQHC VMDESQNGTN IWVTACDPSI KPAVDQVFST LEDDFAYYKT YTSVTGFDVC  60
KSSDIKNKYG IILKKKLVCN REGFKDAKPN NPSEQNTTTQ TKRRRPSNRV GCMAKIVFRR  120
DSAGRYWPPT IHRDCSKVNI GASKSHDLYA EMVGGVENVG ATQQDFKNYR REILVYMQGG  180
DAQMLISKYL DLKSDYDDMY FEYEANENDQ LACVFWADGM ARKQYSVFRD VVSFDATYKT  240
NRYSLVFVPF TGIDHHKKCV TFAAALIARE DVDSYCWILR NFKNVMGSTP PLTVTDQDPA  300
MKVAIAREFP ETSHRYCMWH IMAKVGDKVS PELAKNEAFR RELNDVVWND SLTTAKFEVA  360
WKGVIQKFGL MENPWLNRMY DERASWIPAC FEGVFMGGLK EICAGCFECR VRAVAHGEAG  420
NTYEVEDEHE IRYTVFVENG TRTTTCECRM YNRIGLLCSH AFAVLIYDRN GDIPRNISPP  480
RWTRTALTNS PIKTCNDTLQ RGNHTARGNK EESNVLNTLY RCIAMAQGDV TKLEQISNAL  540
KEIESTWCTN GEDGGVVDKG KRSIKETFCG APTPDSITVH PPAVSSTKGS GKRMRTAKES  600
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-53	FAR1 family protein