PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019168043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19211 Da PI: 7.9167 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.3 | 3.9e-36 | 16 | 117 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++apyf ++q +fa++hk+FG+sn +k+l +p + r++a+ +l+yeA+ar+++PvyG+v+++l+l+qq+ +l+ael XP_019168043.1 16 PCGACKFLRRKCIPSCIFAPYFDSDQgVTRFAAIHKVFGTSNASKILLCIPANLRRCAAITLCYEAQARLSNPVYGCVSTLLALKQQVVSLQAEL 110 7*************************77******************************************************************* PP DUF260 95 allkeel 101 a++k+++ XP_019168043.1 111 AMVKTQI 117 **99885 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 175 aa Download sequence |
MDTYSETAGA VAVQAPCGAC KFLRRKCIPS CIFAPYFDSD QGVTRFAAIH KVFGTSNASK 60 ILLCIPANLR RCAAITLCYE AQARLSNPVY GCVSTLLALK QQVVSLQAEL AMVKTQIMNS 120 RFAVENGLQT SQQQEEPNNV LSISNFSSNF NLIGETTYSD SNCFDPIAFN NHMFR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-55 | LBD family protein |