PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019167778.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24842.1 Da PI: 8.4416 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96 | 1.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskRrng+lKKA+E+SvLCda+v+viif+s+gk++e+ss XP_019167778.1 9 KRIENSSNRQVTFSKRRNGMLKKAKEISVLCDARVSVIIFGSSGKMHEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 75.3 | 1.6e-25 | 69 | 162 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 y+k +gk+l++ak+e+l++e++++kke++n+q e+Rhl+Ged++sL+++eL+ Le++L+++l++i +k++e++++ +++ + + + een++L+ XP_019167778.1 69 YHKLTGKRLWDAKHENLENEINRIKKENDNMQIELRHLKGEDISSLNYRELMILEDALQNGLRSISEKQMEVWRNLTKRYDQ-SQGVAEENEQLS 162 78999*******************************************************************9887766544.455555666665 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence |
MGRGRIEIKR IENSSNRQVT FSKRRNGMLK KAKEISVLCD ARVSVIIFGS SGKMHEFSSS 60 SLVDILDQYH KLTGKRLWDA KHENLENEIN RIKKENDNMQ IELRHLKGED ISSLNYRELM 120 ILEDALQNGL RSISEKQMEV WRNLTKRYDQ SQGVAEENEQ LSYRLRQLEI AAMNRNLGEM 180 GEVFNQRESN DYESQMPFTF SVQPMQPNLQ DR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G20240.1 | 1e-76 | MIKC_MADS family protein |