PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167744.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 432aa    MW: 47517.1 Da    PI: 4.9017
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.11.8e-83464072373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkf 93 
                     ++lLl+cA a++s+d +laq++++ l++ as +g  ++qRl++ f++AL +r ar  ++ y  +           +++a+++l  ++++ P+++f
  XP_019167744.1  46 ERLLLQCASALESNDVTLAQQVMWVLNNVASATGdAANQRLTSWFLRALVSRAARVYPKSYPMCGGGG-----GGRVMAVTELagYVDLIPWYRF 135
                     579*******************************5689*****************6666554333322.....334444444456********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvak 184
                     ++ +aN+aIleav+g+ +vHi+Df++++++QWp+L++aLa+Rpegpp slR+ + +   ++    + + ee+g rLa+fA++  +pf+f+v+   
  XP_019167744.1 136 GFCAANSAILEAVQGCAKVHILDFSVTHCMQWPTLIDALADRPEGPPsSLRLSVPSWRPPVpplLSLSAEEVGLRLANFAKSRSIPFQFSVI--- 227
                     *******************************************999889****9888666687889999**********************8... PP

            GRAS 185 rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        d++   L + +  +Eal+Vn++  l +l+        +r+++L+++k l+P++++v++++ad++++s+  r++++++y + +fdsle+ l++
  XP_019167744.1 228 ---DINNGGLGLFEdaDEALVVNCQNWLRYLP--------CRQTFLDTIKCLNPTLITVIDEDADLDAPSLSSRIVNCFNYLWIIFDSLETFLSK 311
                     ...5666666666666***************9........7889*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegaer.rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                     +s++r+ +E+  +g++i+n++  eg +r +er e+  + + r++++GF +vp+se+++k++k +l +++ ++g++ ++e+g+lvl+Wk+++ v +
  XP_019167744.1 312 DSQQRTEYEAD-VGQKIENIIGFEGGQRiIERLESSTTLSTRMRNSGFVNVPFSEETVKEVKFMLDEHAsGWGMK-KKEDGTLVLTWKGHSSVYA 404
                     ***********.*************998469**************************************666554.46789**********9999 PP

            GRAS 371 SaW 373
                     + W
  XP_019167744.1 405 TTW 407
                     999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    
MGQVVRGNPT FQNLATFLNN NPQSSLSAGA IVGGCLLGSL DGACTERLLL QCASALESND  60
VTLAQQVMWV LNNVASATGD AANQRLTSWF LRALVSRAAR VYPKSYPMCG GGGGGRVMAV  120
TELAGYVDLI PWYRFGFCAA NSAILEAVQG CAKVHILDFS VTHCMQWPTL IDALADRPEG  180
PPSSLRLSVP SWRPPVPPLL SLSAEEVGLR LANFAKSRSI PFQFSVIDIN NGGLGLFEDA  240
DEALVVNCQN WLRYLPCRQT FLDTIKCLNP TLITVIDEDA DLDAPSLSSR IVNCFNYLWI  300
IFDSLETFLS KDSQQRTEYE ADVGQKIENI IGFEGGQRII ERLESSTTLS TRMRNSGFVN  360
VPFSEETVKE VKFMLDEHAS GWGMKKKEDG TLVLTWKGHS SVYATTWVPP YNNHSIHDIS  420
CILESDHYSI MN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-116GRAS family protein