PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167682.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 651aa MW: 70942.5 Da PI: 6.815

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	262	282	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C ++Hg XP_019167682.1 262 PCPDFRK-GTCQRGDACEYSHG 282 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MCSGSRRKVV PDDLAMEGGI QGQEILLELS ANDDLRGFRA AVEEEGLDVN MSGLWYGRRI 60 GSKKMGYEER TPLMVASIFG SKRVLNYILE NGCGEINRAC GSDGATALHC AVSGGSTASL 120 DVIKLLLGYS ADENLVDANG NRAADLIPFC RFTSQKKMME HVLKGGGDTD EGYGLIEKVE 180 EQRVVYPNVS KDGSERKEYP IDPSLPDIKN GIYGTDDFRM YTFKVKPCSR AYSHDWTECP 240 FVHPGENARR RDPRKYHYSC VPCPDFRKGT CQRGDACEYS HGIFECWLHP AQYRTRMCKD 300 ESLCNRRVCF FAHKPEELRP FYASTGSALP SPRSYSLGAS SLDIASITPL ALGSPSIMLP 360 PTSTSGASSP RGGSPRPNQP NITTPTLQFH GSRLKTALNA RDMDLDFGLI GLDDMSALSS 420 PSSWNKISAT TPAFGASSGD RSGEFSRHAG LTPTNLDDIF GTLDPNVLSQ LQSPKGMQIR 480 QNMTQNFLSS FPASPSPSPA RTSSFRMDPS DSASSAVLNS RSAAFAKRSH SFVDRSVASS 540 PTSPAIAMPS TLSGWGSPDG KLDWGIKKEE LSKFRKSASF GIRSSGNNLA MDGTSLSTTA 600 VEPNALWVQS LVNHGQFSME DQQYCLNNRG GSEMHPSWAD QLYMDQEQIV A

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MCSGSRRKVV PDDLAMEGGI QGQEILLELS ANDDLRGFRA AVEEEGLDVN MSGLWYGRRI  60
GSKKMGYEER TPLMVASIFG SKRVLNYILE NGCGEINRAC GSDGATALHC AVSGGSTASL  120
DVIKLLLGYS ADENLVDANG NRAADLIPFC RFTSQKKMME HVLKGGGDTD EGYGLIEKVE  180
EQRVVYPNVS KDGSERKEYP IDPSLPDIKN GIYGTDDFRM YTFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYHYSC VPCPDFRKGT CQRGDACEYS HGIFECWLHP AQYRTRMCKD  300
ESLCNRRVCF FAHKPEELRP FYASTGSALP SPRSYSLGAS SLDIASITPL ALGSPSIMLP  360
PTSTSGASSP RGGSPRPNQP NITTPTLQFH GSRLKTALNA RDMDLDFGLI GLDDMSALSS  420
PSSWNKISAT TPAFGASSGD RSGEFSRHAG LTPTNLDDIF GTLDPNVLSQ LQSPKGMQIR  480
QNMTQNFLSS FPASPSPSPA RTSSFRMDPS DSASSAVLNS RSAAFAKRSH SFVDRSVASS  540
PTSPAIAMPS TLSGWGSPDG KLDWGIKKEE LSKFRKSASF GIRSSGNNLA MDGTSLSTTA  600
VEPNALWVQS LVNHGQFSME DQQYCLNNRG GSEMHPSWAD QLYMDQEQIV A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein