PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019167528.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 432aa MW: 47632.6 Da PI: 9.2441 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_019167528.1 56 YVCEICNQGFQRDQNLQMHRRRH 78 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.7 | 2.1e-05 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_019167528.1 133 WVCDKCSKAYAVQSDYKAHLKTC 155 58*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence |
MLNGNNNPSS SSSQPFAPPE TGVNNSKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI 60 CNQGFQRDQN LQMHRRRHKV PWKLLKRETP VVRKRVFVCP EPTCLHHDPC HALGDLVGIK 120 KHFRRKHSNH KQWVCDKCSK AYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA 180 CSLGRLRSSD QPLPPQAAAA CLSRTASSPS PSSDAAPPWA SSLIVSKPAG GVRAKMMTEC 240 NAAGAAINGN PHHHHNLELQ LLTTTSSSSR LDVSVSSKID DADHSTQLQL SIGSSDYAER 300 NEAAAAAAAE NEKQSFRAMR EEAREQLRAA MEEKAYAKEA RLQAKKQIEL AEQEFANAKR 360 IRQQAQADLN KAQALREHAV RQINSTLLQI TCHACKHQFQ GSAIVSGRPE NALALSYISS 420 ALMESRDLDG KK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 32 | KRKRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-135 | C2H2 family protein |