PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167527.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 432aa MW: 47632.6 Da PI: 9.2441

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_019167527.1 56 YVCEICNQGFQRDQNLQMHRRRH 78 9*********************9 PP
2	zf-C2H2	16.7	2.1e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_019167527.1 133 WVCDKCSKAYAVQSDYKAHLKTC 155 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MLNGNNNPSS SSSQPFAPPE TGVNNSKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI 60 CNQGFQRDQN LQMHRRRHKV PWKLLKRETP VVRKRVFVCP EPTCLHHDPC HALGDLVGIK 120 KHFRRKHSNH KQWVCDKCSK AYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA 180 CSLGRLRSSD QPLPPQAAAA CLSRTASSPS PSSDAAPPWA SSLIVSKPAG GVRAKMMTEC 240 NAAGAAINGN PHHHHNLELQ LLTTTSSSSR LDVSVSSKID DADHSTQLQL SIGSSDYAER 300 NEAAAAAAAE NEKQSFRAMR EEAREQLRAA MEEKAYAKEA RLQAKKQIEL AEQEFANAKR 360 IRQQAQADLN KAQALREHAV RQINSTLLQI TCHACKHQFQ GSAIVSGRPE NALALSYISS 420 ALMESRDLDG KK

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MLNGNNNPSS SSSQPFAPPE TGVNNSKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI  60
CNQGFQRDQN LQMHRRRHKV PWKLLKRETP VVRKRVFVCP EPTCLHHDPC HALGDLVGIK  120
KHFRRKHSNH KQWVCDKCSK AYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA  180
CSLGRLRSSD QPLPPQAAAA CLSRTASSPS PSSDAAPPWA SSLIVSKPAG GVRAKMMTEC  240
NAAGAAINGN PHHHHNLELQ LLTTTSSSSR LDVSVSSKID DADHSTQLQL SIGSSDYAER  300
NEAAAAAAAE NEKQSFRAMR EEAREQLRAA MEEKAYAKEA RLQAKKQIEL AEQEFANAKR  360
IRQQAQADLN KAQALREHAV RQINSTLLQI TCHACKHQFQ GSAIVSGRPE NALALSYISS  420
ALMESRDLDG KK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-135	C2H2 family protein