PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167438.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 851aa    MW: 94845.8 Da    PI: 6.5808
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.35.1e-22147248199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + +++ +++l+ +d+ g +W++k+i+r++++r++l++GW+ Fv++++L +gD ++F +   ++
  XP_019167438.1 147 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-QQPPTQELVAKDLLGSEWRFKHIFRGQPKRHLLQSGWSVFVSSKRLVAGDAFIFLR--GDN 238
                     99*****************************63.4445569************************************************3..377 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+v+v+r+
  XP_019167438.1 239 GDLRVGVRRA 248
                     888****986 PP
2Auxin_resp120.61.2e-39273355183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++tk++F+v+Y+Pr+s++eF++++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg++d dp +Wp+SkWr+Lk
  XP_019167438.1 273 AWHAIQTKTMFTVYYKPRTSPTEFIIPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDRDPHKWPESKWRCLK 355
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MVSSEVSIRG YAETSDGPRA GACSGVRSAA GAGNGDAEAA LYMELWRACA GPLVTVPREQ  60
DLVFYFPQGH IEQVEASTNQ VADQQMPVYG LPPKILCRVF NVLLKAEPDT DEVYAQVTLM  120
PESNQDENAV TRESMLPPQP RFHVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ  180
QPPTQELVAK DLLGSEWRFK HIFRGQPKRH LLQSGWSVFV SSKRLVAGDA FIFLRGDNGD  240
LRVGVRRAMR QQGNAPSSVI SSHSMHLGVL ATAWHAIQTK TMFTVYYKPR TSPTEFIIPY  300
DQYMESLKNN YSIGMRFKMR FEGEEAPEQR FTGTIVGIED RDPHKWPESK WRCLKVRWDE  360
TSTIPRPDRV SPWKIEPALS PSALNPLPVP RPKRHRSNIF PSPDSSVLTR EGSSKISADP  420
SPSTGLPRVL QGQELPTLRG TFAESNESDS SEKPMAWEPP LDDEKIDNLS MSHRHGSDKW  480
LPLGRLESSF TDLLSGIGTQ INSPRGFCLQ SGDQSAVAPS LVKQKTQHQE GEFSLLGKQW  540
SVVPSGLSLN LMDSSMKNHR EGFDATYQPL GDSRYAGCEY SALPGNKHEN HQGNWLVQHQ  600
PMSYVQMPTH SREPMLKSTP MQQHEVMKPK DGNCKLFGIP LITNDSATTQ PAMLPINAMI  660
ESGHMHVGTN SHQTTAIELN QRSEQTKVSK GLDSRPTGNE QEKQFQTLRS GVRDKEGKIY  720
SGSTRSCTKV QKQGTALGRS VDLSKFKNYD ELITKLDQLF DFNGELKSQN KNWIVVYTDD  780
EGDMMLVGDD PWQEFCGMVR KICIYTKDEV QQMNPRALNS KGDDMLSVAE GLDANEVKSS  840
ELPSASSAEE C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein