PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167437.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 853aa    MW: 95063 Da    PI: 6.58
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.35.2e-22149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + +++ +++l+ +d+ g +W++k+i+r++++r++l++GW+ Fv++++L +gD ++F +   ++
  XP_019167437.1 149 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-QQPPTQELVAKDLLGSEWRFKHIFRGQPKRHLLQSGWSVFVSSKRLVAGDAFIFLR--GDN 240
                     99*****************************63.4445569************************************************3..377 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     + l+v+v+r+
  XP_019167437.1 241 GDLRVGVRRA 250
                     888****986 PP
2Auxin_resp120.61.2e-39275357183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++tk++F+v+Y+Pr+s++eF++++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg++d dp +Wp+SkWr+Lk
  XP_019167437.1 275 AWHAIQTKTMFTVYYKPRTSPTEFIIPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDRDPHKWPESKWRCLK 357
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    
MVSSEVSIRG YAETSDGPRA GACSGVRSAA GAGNGNCDAE AALYMELWRA CAGPLVTVPR  60
EQDLVFYFPQ GHIEQVEAST NQVADQQMPV YGLPPKILCR VFNVLLKAEP DTDEVYAQVT  120
LMPESNQDEN AVTRESMLPP QPRFHVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM  180
SQQPPTQELV AKDLLGSEWR FKHIFRGQPK RHLLQSGWSV FVSSKRLVAG DAFIFLRGDN  240
GDLRVGVRRA MRQQGNAPSS VISSHSMHLG VLATAWHAIQ TKTMFTVYYK PRTSPTEFII  300
PYDQYMESLK NNYSIGMRFK MRFEGEEAPE QRFTGTIVGI EDRDPHKWPE SKWRCLKVRW  360
DETSTIPRPD RVSPWKIEPA LSPSALNPLP VPRPKRHRSN IFPSPDSSVL TREGSSKISA  420
DPSPSTGLPR VLQGQELPTL RGTFAESNES DSSEKPMAWE PPLDDEKIDN LSMSHRHGSD  480
KWLPLGRLES SFTDLLSGIG TQINSPRGFC LQSGDQSAVA PSLVKQKTQH QEGEFSLLGK  540
QWSVVPSGLS LNLMDSSMKN HREGFDATYQ PLGDSRYAGC EYSALPGNKH ENHQGNWLVQ  600
HQPMSYVQMP THSREPMLKS TPMQQHEVMK PKDGNCKLFG IPLITNDSAT TQPAMLPINA  660
MIESGHMHVG TNSHQTTAIE LNQRSEQTKV SKGLDSRPTG NEQEKQFQTL RSGVRDKEGK  720
IYSGSTRSCT KVQKQGTALG RSVDLSKFKN YDELITKLDQ LFDFNGELKS QNKNWIVVYT  780
DDEGDMMLVG DDPWQEFCGM VRKICIYTKD EVQQMNPRAL NSKGDDMLSV AEGLDANEVK  840
SSELPSASSA EEC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein