PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167299.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 426aa MW: 49502.7 Da PI: 8.9847

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167299.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2.1e-20	33	125	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAkevGF+ r +++k+ r g+++ + +Cs+eg+++e+k++ ++++rr+r+++r+gCka++ +++ k+g ++v+ +el H+H l+ XP_019167299.1 33 DFYIQYAKEVGFDARHGTKRKN-RAGQVVIKYIMCSREGYKAETKETpnnpNKRKRRRRVSNRVGCKARMGMSNCKSGGYKVHAIELRHTHCLC 125 6***************9999.55557778899******999999999************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MAEDGAKFWT PATDNEKTPY EGQRFETVEA VIDFYIQYAK EVGFDARHGT KRKNRAGQVV 60 IKYIMCSREG YKAETKETPN NPNKRKRRRR VSNRVGCKAR MGMSNCKSGG YKVHAIELRH 120 THCLCSKEGR TFLKINRQLD IGHKTFLANC AKANIGPTKA FRLFKEMVGS FTEVGATCID 180 FCNFRRDLLA YIAEADAQMV IEELFKRKED NPHFYFDFDI DEEAQLTRLF WADAESHRNF 240 ACFGDAMSFN ATYSTNRYKL VFVPFTGVDN HKRCITFGGG LIAKEDVESY EWLLTKFKAA 300 MEYTPRCTIT DQDPTLKVVI PQTMPTTRHR FCMWHIMTKV GEKVGVALWH NEDFKKDLNS 360 TIWDDTLTID EFKSKWKTVM KAYNLEEHRW FTLHTAIRGT CIMDTRVLPQ HIHGRIAKDN 420 IYIRID

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MAEDGAKFWT PATDNEKTPY EGQRFETVEA VIDFYIQYAK EVGFDARHGT KRKNRAGQVV  60
IKYIMCSREG YKAETKETPN NPNKRKRRRR VSNRVGCKAR MGMSNCKSGG YKVHAIELRH  120
THCLCSKEGR TFLKINRQLD IGHKTFLANC AKANIGPTKA FRLFKEMVGS FTEVGATCID  180
FCNFRRDLLA YIAEADAQMV IEELFKRKED NPHFYFDFDI DEEAQLTRLF WADAESHRNF  240
ACFGDAMSFN ATYSTNRYKL VFVPFTGVDN HKRCITFGGG LIAKEDVESY EWLLTKFKAA  300
MEYTPRCTIT DQDPTLKVVI PQTMPTTRHR FCMWHIMTKV GEKVGVALWH NEDFKKDLNS  360
TIWDDTLTID EFKSKWKTVM KAYNLEEHRW FTLHTAIRGT CIMDTRVLPQ HIHGRIAKDN  420
IYIRID

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	89	KRKRRR
2	84	90	KRKRRRR
3	85	89	RKRRR
4	86	91	KRRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-58	FAR1 family protein