PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167069.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 528aa MW: 57791.3 Da PI: 8.8658

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132	2e-41	155	230	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dl++ k+yh+rhkvCe+h+k+++v+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk++ XP_019167069.1 155 CQVHGCKKDLTSSKDYHKRHKVCEAHTKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPR 230 **************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MESWSYVSGE KGFVSEESIS VDDRSRNGFM SWELKAPCGI GGTMGDIETQ GIVGMGSQDL 60 ITKSLGNNHS IFAAPHSAFS GENHSSSKLS TSIVMESSSR DSSLIDLKLG GIPDHRATQI 120 NKSHKPNHPA LSSAQSSTPV KRTRAGGQNS QPPFCQVHGC KKDLTSSKDY HKRHKVCEAH 180 TKTSKVIVNG IEQRFCQQCS RFHLLAEFDD GKRSCRRRLA GHNERRRKPR TGLNSGRTGR 240 LFQSYPAGTS FPGTAFTTSS FVCQDILPSS LPRPPKYEMN DWYRNVKVED GVDFSPPQLA 300 IPLINAHSQP RSLFPSYNPE KHCPPLARCK VSESSNNSYA HDMDVPNFVS HSLFNSNSEV 360 LNAFDSSSTI HGNHGLSGMS SSGHALSLLS SHSQSSSNHS SMVPTPHHLI SPGTNTLYNM 420 AHVSKKHLGA SPPASTSGLS STLNSPGINS SDEARLEQML FSNTGQNFAF NRVVQVPEYM 480 NEKNQICGED GPTINLLQLS SRLQQVQHQR HSMQARQESD VFSGNRIT

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MESWSYVSGE KGFVSEESIS VDDRSRNGFM SWELKAPCGI GGTMGDIETQ GIVGMGSQDL  60
ITKSLGNNHS IFAAPHSAFS GENHSSSKLS TSIVMESSSR DSSLIDLKLG GIPDHRATQI  120
NKSHKPNHPA LSSAQSSTPV KRTRAGGQNS QPPFCQVHGC KKDLTSSKDY HKRHKVCEAH  180
TKTSKVIVNG IEQRFCQQCS RFHLLAEFDD GKRSCRRRLA GHNERRRKPR TGLNSGRTGR  240
LFQSYPAGTS FPGTAFTTSS FVCQDILPSS LPRPPKYEMN DWYRNVKVED GVDFSPPQLA  300
IPLINAHSQP RSLFPSYNPE KHCPPLARCK VSESSNNSYA HDMDVPNFVS HSLFNSNSEV  360
LNAFDSSSTI HGNHGLSGMS SSGHALSLLS SHSQSSSNHS SMVPTPHHLI SPGTNTLYNM  420
AHVSKKHLGA SPPASTSGLS STLNSPGINS SDEARLEQML FSNTGQNFAF NRVVQVPEYM  480
NEKNQICGED GPTINLLQLS SRLQQVQHQR HSMQARQESD VFSGNRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-49	SBP family protein