PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167023.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 527aa MW: 59759.1 Da PI: 4.5016

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.3e-08	271	319	2	47
SSS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+el+ ++v + lG++ W+ a +++ +Rt+ +++s+++++ XP_019167023.1 271 QKWTEEEQELFHEVVssspASLGKNFWHHLAVEFP-HRTRREIVSYYFNV 319 79***********3333357777******.*********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MVQKRPFEQE YFNEVSSKQP RHVETNDHLI SLEYPYEPAY LKSHASGEDG DISFKGKPLS 60 DKKYECVYTA ELPSFEKDRE MGFPGSASHS SWATSSTSEE DVRSEGPHNT SFSPEYYNHD 120 IPFRTVTHSK ELYSYLLRNP PSKLVPVGPD FQAEIPECGG CGNKEKANSS KDACKTIDHS 180 YESLESNCGG QFDYENRLAG TCIVPNSKSE SAAYSSEAVA SGRSDCCCED TGSVRCIQQH 240 IIEAREKLKT LLGEETFVKL GFYDMGEVVA QKWTEEEQEL FHEVVSSSPA SLGKNFWHHL 300 AVEFPHRTRR EIVSYYFNVF MLRIRAEQNR LDPLNIDSDN DEWQEEAYDS AGEEEAKMTD 360 EDEDSVVESP VHHDDPGHIL IYDDYKHPYY EDAGLAIWRD YKHLGHDTNK VVTTVPEECG 420 DKLFEKHSSE LTVQHPDRSE PNEANHAELD GPSTRADNKH WTSDYVGTGN SNGHEFVLEP 480 RFGREWDVGY SSCTKNDVDF LPTCSMIEEV FGNEACYDKS RDGYGSS

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MVQKRPFEQE YFNEVSSKQP RHVETNDHLI SLEYPYEPAY LKSHASGEDG DISFKGKPLS  60
DKKYECVYTA ELPSFEKDRE MGFPGSASHS SWATSSTSEE DVRSEGPHNT SFSPEYYNHD  120
IPFRTVTHSK ELYSYLLRNP PSKLVPVGPD FQAEIPECGG CGNKEKANSS KDACKTIDHS  180
YESLESNCGG QFDYENRLAG TCIVPNSKSE SAAYSSEAVA SGRSDCCCED TGSVRCIQQH  240
IIEAREKLKT LLGEETFVKL GFYDMGEVVA QKWTEEEQEL FHEVVSSSPA SLGKNFWHHL  300
AVEFPHRTRR EIVSYYFNVF MLRIRAEQNR LDPLNIDSDN DEWQEEAYDS AGEEEAKMTD  360
EDEDSVVESP VHHDDPGHIL IYDDYKHPYY EDAGLAIWRD YKHLGHDTNK VVTTVPEECG  420
DKLFEKHSSE LTVQHPDRSE PNEANHAELD GPSTRADNKH WTSDYVGTGN SNGHEFVLEP  480
RFGREWDVGY SSCTKNDVDF LPTCSMIEEV FGNEACYDKS RDGYGSS