PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166577.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 539aa MW: 58350.6 Da PI: 9.0623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_019166577.1 77 FICEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MMSSDDALSS LTSSMRAFIN NNNNQDPNPN PNPNPTQTPN PNPNPSNKRK RNLPGNPDPD 60 AEVIALSPKS LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNN KEVIKKKVYI 120 CPEKSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDRK DSFITHRAFC 180 DALAEESARF TSVPNLNFRN ELLSAGNPGF GSHVFRPPQN EMVVGVDAAG NHHQLGLDGQ 240 KPRLPLWLDA NNNAHHLGNA NEFAGGGGGG GLAHELLQMA AAPANMLGLS SQNHWFHGSG 300 SASSSSLPPV LKEEDEGKIS SMFYNHIQEA AAAAPPAHMS ATALLQKAAQ MGSSRSGGNN 360 TSSPLFGTGF GLVGSTLSSL AGSFNSRNEL HHHHHQNLGK QQPQPHDQTL NGLQTSNAST 420 LTAPANNNNN NTQPNDHHHP GLLLGDMNSS SLMGNNNLEN SSSSSLMMQN THGKHLNHTL 480 PSGNNSEVVE GSLTRDFLGV GGNEGQGQGQ GRPFFQPHEL AKFASSTSSL PLNDYSRHN

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MMSSDDALSS LTSSMRAFIN NNNNQDPNPN PNPNPTQTPN PNPNPSNKRK RNLPGNPDPD  60
AEVIALSPKS LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNN KEVIKKKVYI  120
CPEKSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDRK DSFITHRAFC  180
DALAEESARF TSVPNLNFRN ELLSAGNPGF GSHVFRPPQN EMVVGVDAAG NHHQLGLDGQ  240
KPRLPLWLDA NNNAHHLGNA NEFAGGGGGG GLAHELLQMA AAPANMLGLS SQNHWFHGSG  300
SASSSSLPPV LKEEDEGKIS SMFYNHIQEA AAAAPPAHMS ATALLQKAAQ MGSSRSGGNN  360
TSSPLFGTGF GLVGSTLSSL AGSFNSRNEL HHHHHQNLGK QQPQPHDQTL NGLQTSNAST  420
LTAPANNNNN NTQPNDHHHP GLLLGDMNSS SLMGNNNLEN SSSSSLMMQN THGKHLNHTL  480
PSGNNSEVVE GSLTRDFLGV GGNEGQGQGQ GRPFFQPHEL AKFASSTSSL PLNDYSRHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	6e-81	C2H2 family protein