PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166576.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 561aa MW: 60866.5 Da PI: 8.9897

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166576.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_019166576.1 77 FICEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	11.7	0.00081	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_019166576.1 154 WKCEKCSKKYAVQSDWKAHSKIC 176 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MMSSDDALSS LTSSMRAFIN NNNNQDPNPN PNPNPTQTPN PNPNPSNKRK RNLPGNPDPD 60 AEVIALSPKS LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNN KEVIKKKVYI 120 CPEKSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKICGTRE 180 YKCDCGTLFS RKDSFITHRA FCDALAEESA RFTSVPNLNF RNELLSAGNP GFGSHVFRPP 240 QNEMVVGVDA AGNHHQLGLD GQKPRLPLWL DANNNAHHLG NANEFAGGGG GGGLAHELLQ 300 MAAAPANMLG LSSQNHWFHG SGSASSSSLP PVLKEEDEGK ISSMFYNHIQ EAAAAAPPAH 360 MSATALLQKA AQMGSSRSGG NNTSSPLFGT GFGLVGSTLS SLAGSFNSRN ELHHHHHQNL 420 GKQQPQPHDQ TLNGLQTSNA STLTAPANNN NNNTQPNDHH HPGLLLGDMN SSSLMGNNNL 480 ENSSSSSLMM QNTHGKHLNH TLPSGNNSEV VEGSLTRDFL GVGGNEGQGQ GQGRPFFQPH 540 ELAKFASSTS SLPLNDYSRH N

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MMSSDDALSS LTSSMRAFIN NNNNQDPNPN PNPNPTQTPN PNPNPSNKRK RNLPGNPDPD  60
AEVIALSPKS LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNN KEVIKKKVYI  120
CPEKSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKICGTRE  180
YKCDCGTLFS RKDSFITHRA FCDALAEESA RFTSVPNLNF RNELLSAGNP GFGSHVFRPP  240
QNEMVVGVDA AGNHHQLGLD GQKPRLPLWL DANNNAHHLG NANEFAGGGG GGGLAHELLQ  300
MAAAPANMLG LSSQNHWFHG SGSASSSSLP PVLKEEDEGK ISSMFYNHIQ EAAAAAPPAH  360
MSATALLQKA AQMGSSRSGG NNTSSPLFGT GFGLVGSTLS SLAGSFNSRN ELHHHHHQNL  420
GKQQPQPHDQ TLNGLQTSNA STLTAPANNN NNNTQPNDHH HPGLLLGDMN SSSLMGNNNL  480
ENSSSSSLMM QNTHGKHLNH TLPSGNNSEV VEGSLTRDFL GVGGNEGQGQ GQGRPFFQPH  540
ELAKFASSTS SLPLNDYSRH N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-104	C2H2 family protein