PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019166507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ARF | ||||||||
Protein Properties | Length: 675aa MW: 74604.4 Da PI: 8.0298 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.9 | 1.1e-24 | 114 | 215 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+t +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + + XP_019166507.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfppldysADPPVQ--TVTAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAN 204 89****************************996555555..8************************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+++r+ XP_019166507.1 205 NGELFVGIRRA 215 9999*****97 PP | |||||||
2 | Auxin_resp | 109.1 | 4.6e-36 | 280 | 363 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+v++++v++a+++++++ mRfkmafetedss++++ +Gtv++v+ dp+rWpnS+Wr+L+ XP_019166507.1 280 AARLAGSGKPFEVVYYPRASTPEFCVRASSVHSAMRIQWCARMRFKMAFETEDSSRISWfMGTVSSVRVNDPIRWPNSPWRLLQ 363 67788899**************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence |
MKELGDDKCL DPQLWHACAG GMVQMPPVNS KVYYFPQGHG EHTLTNVDFS NLTKISPMIL 60 CRVGTVKYLA DPESDEVYAK LKLVPIGREH GFDDDVVLGS NTTAPDTAEK SNSFAKTLTQ 120 SDANNGGGFS VPRYCAETIF PPLDYSADPP VQTVTAKDVH GETWKFRHIY RGTPRRHLLT 180 TGWSTFVNQK KLVAGDSIVF LRANNGELFV GIRRAKKGGI GGSDAPQGWS SAAGNYGAYP 240 SFLREDDNKT IRSTSTPKLS SSGGRFRERG RVKPESVLEA ARLAGSGKPF EVVYYPRAST 300 PEFCVRASSV HSAMRIQWCA RMRFKMAFET EDSSRISWFM GTVSSVRVND PIRWPNSPWR 360 LLQVTWDEPD LLQNVKNVSP WMVELVSNMP IIHMSPFSPP RKKLCLPQDF SLDSQFQIPS 420 FSGNALGASS PFYCLTDVAA GLQGARHPQS GQPSLDLHLN NKLNMGLSPP SLRQFNTDCR 480 IPDAITRGQN DNSENISCLL TMGNSTQKSD TTDELMTPRF LLFGHPILTE QQMSQNCPTG 540 PVSQIREVQS SPGGKEVNSA ELGIDTGHCK VFMESEDISQ TLDLSVVDSY EELYKKLAHM 600 FGIESSEVMK RVLYHDAAGA VKQIGDDPFS EFVKKAKRLT ILRKSGSSSE RTGTSRVREA 660 VSSSDDRRGK MPMIS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |