PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166421.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 376aa MW: 42126.6 Da PI: 6.8447

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.5e-33	260	315	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ XP_019166421.1 260 KQRRCWSPELHKRFVNALQQLGGAQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 315 79****************************************************97 PP
2	Myb_DNA-binding	46.8	7e-15	262	313	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e+++++v+a +qlGg t+k I + m+ g+t ++ks++qky+ XP_019166421.1 262 RRCWSPELHKRFVNALQQLGGAqvaTPKQIRELMQvDGLTNDEVKSHLQKYR 313 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MKMSSIPSEL SLDCRPVFVP RTITEFLAEI SLIGSLSDRV LKIDDYVARL EDEMRKIDAF 60 KRELPLCMLL VNDAIVALKE ESVQCRKSKV EPVLEEFIPL KKSCDGGGDR VEIRKDKDSR 120 EKMNWMSSAQ LWHGENHSPS SEFTNKKPRT EANLRMTTEE AENSSITNDL LVSCKTRNIG 180 KAFMPFKRYS GFPSAVVMKE DKELPGIPGL SLGTPGFKNP REDMVIGCLN TKACVSSASS 240 SSVHSIQTGA QPQQQQTSRK QRRCWSPELH KRFVNALQQL GGAQVATPKQ IRELMQVDGL 300 TNDEVKSHLQ KYRLHTRRLP GSQATSANQS VVLGNLFMPH DQSHESSKQS SSQSGSPQDP 360 LHHQDDSMEE EEEGDE

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MKMSSIPSEL SLDCRPVFVP RTITEFLAEI SLIGSLSDRV LKIDDYVARL EDEMRKIDAF  60
KRELPLCMLL VNDAIVALKE ESVQCRKSKV EPVLEEFIPL KKSCDGGGDR VEIRKDKDSR  120
EKMNWMSSAQ LWHGENHSPS SEFTNKKPRT EANLRMTTEE AENSSITNDL LVSCKTRNIG  180
KAFMPFKRYS GFPSAVVMKE DKELPGIPGL SLGTPGFKNP REDMVIGCLN TKACVSSASS  240
SSVHSIQTGA QPQQQQTSRK QRRCWSPELH KRFVNALQQL GGAQVATPKQ IRELMQVDGL  300
TNDEVKSHLQ KYRLHTRRLP GSQATSANQS VVLGNLFMPH DQSHESSKQS SSQSGSPQDP  360
LHHQDDSMEE EEEGDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-56	G2-like family protein