PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166349.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 475aa MW: 51039.9 Da PI: 5.7639

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166349.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	295	342	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_019166349.1 295 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 342 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MDKQNLFLSD GITMPYGVGV EANDFFNPSW ENPVDQSDPF ESALSSMVSS PAASNAGVAP 60 AAANASGGNE NFVLRELIGR LGSFDSPGDI SPAACTNSSC YNTPLNSPPK LNLSSMADHQ 120 IRGANFPIHP GLSSFSADPG FAERAARFSC FSDKSLVNSG KLSGLSVKVH GSQMAAIQET 180 SAPSKKLTLE NSELGDSREN STVSEQIPVG ENAKNDANSR KRKSAAKGKA KETTTTTATP 240 SSSSANATSQ NNESNPKRIK SDEQNSGNDK AAGENKEAPK DYIHVRARRG QATDAHSLAE 300 RVRREKISER MKLLQDLVPG CNKVTGKAVM LDEIINYVQS LQRQVEFLSM KLSTINPRME 360 FNMEALLSKD MYQYRGAMAQ NMFSSEASGS PIPYSFQSLP SISLLPKGSE VPFPINSSRN 420 LGLALPPMDT FLEPASQVPG FFEDDLNTVV QMGFGQNQSQ NFHGTVGASE MKVEL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MDKQNLFLSD GITMPYGVGV EANDFFNPSW ENPVDQSDPF ESALSSMVSS PAASNAGVAP  60
AAANASGGNE NFVLRELIGR LGSFDSPGDI SPAACTNSSC YNTPLNSPPK LNLSSMADHQ  120
IRGANFPIHP GLSSFSADPG FAERAARFSC FSDKSLVNSG KLSGLSVKVH GSQMAAIQET  180
SAPSKKLTLE NSELGDSREN STVSEQIPVG ENAKNDANSR KRKSAAKGKA KETTTTTATP  240
SSSSANATSQ NNESNPKRIK SDEQNSGNDK AAGENKEAPK DYIHVRARRG QATDAHSLAE  300
RVRREKISER MKLLQDLVPG CNKVTGKAVM LDEIINYVQS LQRQVEFLSM KLSTINPRME  360
FNMEALLSKD MYQYRGAMAQ NMFSSEASGS PIPYSFQSLP SISLLPKGSE VPFPINSSRN  420
LGLALPPMDT FLEPASQVPG FFEDDLNTVV QMGFGQNQSQ NFHGTVGASE MKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	224	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	2e-65	bHLH family protein