PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165987.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 571aa MW: 64175 Da PI: 5.4717

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	325	368	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ Lr l+Pk + Kl+ a+iL A+eY+ +Lq XP_019165987.1 325 VAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMELQ 368 68*******************66......**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MILVQSIVER LRPIVGSKNW DYCVFWKMSE DQRFLEWLCC CCAGADGVHN CEQELLFPVS 60 SSSSSSSSSC LPCRDVLFQH PRTKSCDLLA QLPASILLDS GMYAQAFLSS QAKWLNFSQL 120 SESNVSDEII GTRVLIPQPL GLIELFAAKL VPEDQQVIDF VSSQCSIYLE QQAMMLNSGS 180 SSGIPADNGD DQMDPRNLFQ PVISPSPSAH PIHLTSLPMS FLPQLSYTAD IGSCKSGTSM 240 LMQNTSELSA FRSQMENGLD EIDVVQKQLM ERLENKDEQG GNDDDSYRQE NGRSHSISDS 300 DQNEDEDDAK YRRRTGKGPQ SKNLVAERKR RKKLNERLYA LRALVPKISK LDRASILGDA 360 IEYVMELQKQ AKDLQNELEV NSDDEGTGRR NRNNLRAEDR NGINPCVPKP EPEKHSNLES 420 EKTDDKVQQM EPQVEVAQLD GSEFLVKVFC EHKYGGFVRL MEALNSLGLE VTNVNTTRHT 480 CLVSNIFKVE KRDSEMVQAD HVRESLLELT RNPGGRGWAE MGGKEANASI SESSDHNGMG 540 MGMGMEHHHQ QHRLHHHLQQ INSHRLHHLH N

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MILVQSIVER LRPIVGSKNW DYCVFWKMSE DQRFLEWLCC CCAGADGVHN CEQELLFPVS  60
SSSSSSSSSC LPCRDVLFQH PRTKSCDLLA QLPASILLDS GMYAQAFLSS QAKWLNFSQL  120
SESNVSDEII GTRVLIPQPL GLIELFAAKL VPEDQQVIDF VSSQCSIYLE QQAMMLNSGS  180
SSGIPADNGD DQMDPRNLFQ PVISPSPSAH PIHLTSLPMS FLPQLSYTAD IGSCKSGTSM  240
LMQNTSELSA FRSQMENGLD EIDVVQKQLM ERLENKDEQG GNDDDSYRQE NGRSHSISDS  300
DQNEDEDDAK YRRRTGKGPQ SKNLVAERKR RKKLNERLYA LRALVPKISK LDRASILGDA  360
IEYVMELQKQ AKDLQNELEV NSDDEGTGRR NRNNLRAEDR NGINPCVPKP EPEKHSNLES  420
EKTDDKVQQM EPQVEVAQLD GSEFLVKVFC EHKYGGFVRL MEALNSLGLE VTNVNTTRHT  480
CLVSNIFKVE KRDSEMVQAD HVRESLLELT RNPGGRGWAE MGGKEANASI SESSDHNGMG  540
MGMGMEHHHQ QHRLHHHLQQ INSHRLHHLH N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	333	RRRTGKGPQSKNLVAERKRRKK
2	327	334	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-137	bHLH family protein