PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165853.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 290aa    MW: 32109.3 Da    PI: 9.9546
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.62.8e-15158211256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++t++q   Le+ F+++++++ ++   LAk+l+L  rqV vWFqNrRa+ k
  XP_019165853.1 158 RKKLRLTRQQSAFLEQTFKQHSTLNPNKV-ALAKQLNLRPRQVEVWFQNRRARTK 211
                     678899******************98875.7**********************98 PP
2HD-ZIP_I/II116.31.8e-37158247192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rl+++q+++LE++F+++++L+p+ Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l++en+rL+kev+eLr +lk
  XP_019165853.1 158 RKKLRLTRQQSAFLEQTFKQHSTLNPN-KVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLRDENKRLQKEVQELR-ALK 247
                     69***********************96.89*********************************************************9.555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MELGLSVGGD SNSIPTLKPF SFLQIPASAS AYEDQKNGRR GKDNNIGFCM AALGDEEPPL  60
QLALLPLSPP PLPCAAAQPR FPWLSHNLGS EPGFLSNLPG FLSSPNTSGA SSFPATGRKN  120
VRWWSRKRDM MTERRASSNN NSVGSDEDDE INGGGLGRKK LRLTRQQSAF LEQTFKQHST  180
LNPNKVALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLRRCCETLR DENKRLQKEV  240
QELRALKTTS HPFYNHLPAT TLNICPSCTA ATTPSAAATN TARSLPKSEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206214RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-52HD-ZIP family protein