PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165550.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 476aa MW: 52212 Da PI: 5.3386

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4.2e-33	263	317	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+ Lt++hvkSHLQkYR+ XP_019165550.1 263 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVDHLTIYHVKSHLQKYRT 317 79****************************************************8 PP
2	Myb_DNA-binding	53.2	6.9e-17	265	316	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+av++lGg t+k + + m ++t +++ks++qky+ XP_019165550.1 265 RMRWTPELHEAFVEAVNKLGGSeraTPKGVLKLMKvDHLTIYHVKSHLQKYR 316 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MEARPALSIQ RVGSRQLNNF GASGALSSSL PVLPTNLEGK YPKLPDSQQI SLERETMQCP 60 PAVAPLSSNS EVAGLMFSSS SGFSSDLHFS SASPLENHSR QPPFISQSTN NESSMLLPDS 120 GVLQSTASSH YSKQNIGPWS TDSLTDFLDY PINTPTHSGQ LQCSNNADCA ITSEDLGKRN 180 DWQEWADQLI TDDDALAANW SDIIADTSTA DPKPKLQVQY QVSKQSSNLQ IQHSQASQQL 240 VAFPEETSAT VPLSSTAGAA PTKQRMRWTP ELHEAFVEAV NKLGGSERAT PKGVLKLMKV 300 DHLTIYHVKS HLQKYRTARY KPESSEASSE KKQSAIDDFP SLDLKAGIEI TEALRLQMEV 360 QKRLHEQLEI QRNLQLRIEE QGRYLQMMFE KQFKSMPNID MGKGSSPTSE NPVAQLTDGV 420 QTSPGKSDPV ANHPMTGDND SANAVASVND SQTREEKQKE RETGEVPATS KRAKVD

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MEARPALSIQ RVGSRQLNNF GASGALSSSL PVLPTNLEGK YPKLPDSQQI SLERETMQCP  60
PAVAPLSSNS EVAGLMFSSS SGFSSDLHFS SASPLENHSR QPPFISQSTN NESSMLLPDS  120
GVLQSTASSH YSKQNIGPWS TDSLTDFLDY PINTPTHSGQ LQCSNNADCA ITSEDLGKRN  180
DWQEWADQLI TDDDALAANW SDIIADTSTA DPKPKLQVQY QVSKQSSNLQ IQHSQASQQL  240
VAFPEETSAT VPLSSTAGAA PTKQRMRWTP ELHEAFVEAV NKLGGSERAT PKGVLKLMKV  300
DHLTIYHVKS HLQKYRTARY KPESSEASSE KKQSAIDDFP SLDLKAGIEI TEALRLQMEV  360
QKRLHEQLEI QRNLQLRIEE QGRYLQMMFE KQFKSMPNID MGKGSSPTSE NPVAQLTDGV  420
QTSPGKSDPV ANHPMTGDND SANAVASVND SQTREEKQKE RETGEVPATS KRAKVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	6e-92	G2-like family protein