PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165472.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-PHD

Protein Properties

Length: 738aa MW: 82356.2 Da PI: 4.7104

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.6	1e-13	673	724	2	53
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ ++ ++ +++L e F++n+yp++e +e LA++lgLt +qV+ WF N R XP_019165472.1 673 NTKSRYGEDVIKRLFESFKENQYPNREVKESLAAELGLTAQQVSKWFENARR 724 5677788999***************************************995 PP
2	PHD	39.1	1.8e-13	347	401	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ Cg+ ++++++lCdg C++ fH+ Cl+++l +e++p g wlC+ C + XP_019165472.1 347 FCAKCGSkdLPADNDIILCDGaCERGFHQFCLEPPLLKEDIPPGdeAWLCPGCVC 401 699*966566****66****************9999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MATNSNCGSL GPNSTEYDHQ NAKAKLVERI ELPLEPDSMD STQQHKKPEL ENCDVNSDVG 60 EMTLPPGFET RNSTVGYSSQ LHNKVTGNLC PQQLKEPHTD AIGSPSGTLM RINENNEKQA 120 EMPSKHKFLR PPQEDLTLNL RSKNVELPPE NEGAYSVADP AEPPGFESHN RGHRLKGTCK 180 DANKSPAQLE HEEKGPPESI STFRTDVNTT RVLRPKTHKQ SESPIPNDAA AGDSDDSKNN 240 RTRRKEKQKK QNAVNEFSSI RTKLRYLLHR IKYEQNLIDA YSGEGWKGKS IEKIKPEKEL 300 QRAKSGIFTY KLKIRDLFQR IDMILAHGRL PESSFDSKGL IDSEDIFCAK CGSKDLPADN 360 DIILCDGACE RGFHQFCLEP PLLKEDIPPG DEAWLCPGCV CKLDCFVLLN DLLGTNLSLT 420 DRWEKVFPEE AASVVSGKKL DDVPGLPSDD SEDDDYNPDH LEVEENGSGD ESTSEESDYF 480 SASDDLAAPV NNDQLMGLPS DDSEDDDYDP DAPDHDVQVM QESSGSDFTS DSEDLGPEVT 540 DTRTPSQDQC GETKIGGVAQ HSLKDELSYQ QPSDDLVSQK RYGEGLDYKK SNDETHQSTS 600 SDYCDEEYGC TAPKRKNGSR KAAQKSSDQA AMGAMNTNFN QSETEHTTER RSRKRLKVED 660 SVTPEQGSSS KRNTKSRYGE DVIKRLFESF KENQYPNREV KESLAAELGL TAQQVSKWFE 720 NARRSFHHSS SNQPKNQS

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MATNSNCGSL GPNSTEYDHQ NAKAKLVERI ELPLEPDSMD STQQHKKPEL ENCDVNSDVG  60
EMTLPPGFET RNSTVGYSSQ LHNKVTGNLC PQQLKEPHTD AIGSPSGTLM RINENNEKQA  120
EMPSKHKFLR PPQEDLTLNL RSKNVELPPE NEGAYSVADP AEPPGFESHN RGHRLKGTCK  180
DANKSPAQLE HEEKGPPESI STFRTDVNTT RVLRPKTHKQ SESPIPNDAA AGDSDDSKNN  240
RTRRKEKQKK QNAVNEFSSI RTKLRYLLHR IKYEQNLIDA YSGEGWKGKS IEKIKPEKEL  300
QRAKSGIFTY KLKIRDLFQR IDMILAHGRL PESSFDSKGL IDSEDIFCAK CGSKDLPADN  360
DIILCDGACE RGFHQFCLEP PLLKEDIPPG DEAWLCPGCV CKLDCFVLLN DLLGTNLSLT  420
DRWEKVFPEE AASVVSGKKL DDVPGLPSDD SEDDDYNPDH LEVEENGSGD ESTSEESDYF  480
SASDDLAAPV NNDQLMGLPS DDSEDDDYDP DAPDHDVQVM QESSGSDFTS DSEDLGPEVT  540
DTRTPSQDQC GETKIGGVAQ HSLKDELSYQ QPSDDLVSQK RYGEGLDYKK SNDETHQSTS  600
SDYCDEEYGC TAPKRKNGSR KAAQKSSDQA AMGAMNTNFN QSETEHTTER RSRKRLKVED  660
SVTPEQGSSS KRNTKSRYGE DVIKRLFESF KENQYPNREV KESLAAELGL TAQQVSKWFE  720
NARRSFHHSS SNQPKNQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-78	HB-PHD family protein