PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019165447.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 344aa    MW: 37856.4 Da    PI: 7.6594
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019165447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.9e-18255288134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+C++ kTp+WR gp g+ktLCnaCG++y++ +
  XP_019165447.1 255 CSHCQVQKTPQWRTGPMGPKTLCNACGVRYKSGR 288
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MECIEARAFK SSALKKIAMK SNQQVFFDDV WCLAGLNNVG SDDFSVDDLL DFSDKDFSES  60
RSSLDSEEVE GRKSSFSLVS PHHRNYNSQT FSGTEDFGSL STGQFLLPVD DMENLEWLSR  120
IVDDSSSELS LFCPNPSFQP ATGTFLENRC EPVIIQAAQN IKPPLPVPVQ RKQRSKRSRL  180
SGKVWSYVAP SLTSESSSPS SSYGSSSLPG MSCANPVHDG DLFSSVEKPP AKKLKRKSSV  240
ETGPGSGVTQ TLRRCSHCQV QKTPQWRTGP MGPKTLCNAC GVRYKSGRLF PEYRPACSPT  300
FSLEIHSNSH RKVLEMRRKK EDTEVIDAGS GSGSTTPALV ENFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-54GATA family protein