PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019165269.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20530.2 Da PI: 7.3738 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.2 | 3.5e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl+ eA+ r+ +Pv+Gavg++++++++++q+ XP_019165269.1 2 SCNGCRILRKGCNDNCILRQSLqgietPQAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLLEACGRTVNPVHGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_019165269.1 97 AVEAVLR 103 *998765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MSCNGCRILR KGCNDNCILR QSLQGIETPQ AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLLE ACGRTVNPVH GAVGLLWTGN WHVCQAAVEA VLRGGTPRPL PEYTIPTPSQ 120 ESDEVAGDLD LGLTTAARMT GGGRGYRRVE KRRADTPSEE SETSTLESGF VYHLSSHQSS 180 ETNLLRLFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 9e-65 | LBD family protein |