PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019165075.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 18874.6 Da PI: 9.4402 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.6 | 8.6e-38 | 8 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC +dC++apyf eq ++kfa++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ l+a+ XP_019165075.1 8 PCGACKFLRRKCGADCIFAPYFRWEQlgAAKFAAIHKVFGASNVSKLLSNVPVHDRYEAALTIAYEAQARIKDPVYGCVAHIFALQQQVAYLQAQ 102 7*********************9999667****************************************************************** PP DUF260 94 lallkee 100 l ++k e XP_019165075.1 103 LLQVKGE 109 9888765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence |
MATGTGSPCG ACKFLRRKCG ADCIFAPYFR WEQLGAAKFA AIHKVFGASN VSKLLSNVPV 60 HDRYEAALTI AYEAQARIKD PVYGCVAHIF ALQQQVAYLQ AQLLQVKGEL AQRTLNVNSR 120 RGENDWVRGT GYAYNTEGDG FLEMMQSSSR KRASQSDLGE LQALASRMMK N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42430.1 | 4e-51 | LBD family protein |