PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019165055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26651.5 Da PI: 6.4975 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.9 | 8.4e-39 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +kll++lp +r++a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l XP_019165055.1 10 PCGACKFLRRKCVKGCVFAPYFCHEQgASHFAAIHKVFGASNASKLLSHLPVADRPEAAITISYEAQARLQDPIYGCVSHIFALQQQVINLRAQL 104 7*************************89******************************************************************* PP DUF260 95 allkee 100 a+lke+ XP_019165055.1 105 ASLKEQ 110 *99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MSSGSTSGSP CGACKFLRRK CVKGCVFAPY FCHEQGASHF AAIHKVFGAS NASKLLSHLP 60 VADRPEAAIT ISYEAQARLQ DPIYGCVSHI FALQQQVINL RAQLASLKEQ AAQTFCNSGN 120 PNYDKSWGRQ PCYYSQDVEG WLGSGTLESV PQFPNNNVGE MGFYSNGNLN HHHHNLNPIY 180 NQTSILPEEN MSSYATSFEE GSSSMDSLDI QTADNKPWPP AAYHDDRDDL QSVAFRYLQH 240 H |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 6e-68 | LBD family protein |