PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165050.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 275aa MW: 29656.4 Da PI: 6.5765

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.5	6.8e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++ +q+ XP_019165050.1 4 SCNGCRVLRKGCSENCTLRPCLhwiksPESQANATVFLAKFYGRAGLINLINAGPDHLRPAIFRSLLYEACGRIINPIYGSVGLMWAGNWDRCQE 98 6******************************************************************************************** PP DUF260 91 kaelallkee 100 ++e++l+++e XP_019165050.1 99 AVEAVLRGSE 108 *9988766 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MRMSCNGCRV LRKGCSENCT LRPCLHWIKS PESQANATVF LAKFYGRAGL INLINAGPDH 60 LRPAIFRSLL YEACGRIINP IYGSVGLMWA GNWDRCQEAV EAVLRGSEIM QVNIEDGGGG 120 GAAAESHPIM PFKGCDIRHL SKESAGGVHR VRSRNRFKRT GTSHDKAVDH LEFMVEEDEP 180 PAKFSITGWG GGGGGGCETA ESVGLERAPS HGSSSLETVE PVLANRDHPV SGSIAEIRTA 240 DRGSDDELLL DLTLGFNPVE RPHLSTVDKH SVGDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-73	LBD family protein