PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164913.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Whirly
Protein Properties Length: 279aa    MW: 30810.9 Da    PI: 9.1217
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly215.17e-671012391139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s+yk+kaal+v + +p+f+ ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sceffhdp +++s+eGkvrk+lk
  XP_019164913.1 101 SIYKGKAALTVVPCAPEFSPLDSGAFKLSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTELGSLISLGAKDSCEFFHDPNKGKSDEGKVRKVLK 195
                     7********************************************************************************************** PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                     +ePlpdGsG+f+nlsv+n+l++++e++++Pvskaefavl s+++
  XP_019164913.1 196 IEPLPDGSGHFFNLSVQNKLINVDENIYIPVSKAEFAVLVSAFN 239
                     ****************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MGTMLNPCLS SSSSPRGLHT QTPLFSHPFQ SLSSRSSLST LFKSSSLPAQ KPLQWRKLSL  60
ECRHSDYFEP HQQQNQWASP NNSSFSSQPG TLPPKVFIGY SIYKGKAALT VVPCAPEFSP  120
LDSGAFKLSK EGFVLLQFAP AAGVRQYDWG RKQVFSLSVT ELGSLISLGA KDSCEFFHDP  180
NKGKSDEGKV RKVLKIEPLP DGSGHFFNLS VQNKLINVDE NIYIPVSKAE FAVLVSAFNF  240
VLPYLLGWHT FVSSVGPEDA NYANNATNPR SGADFEWRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-110Whirly family protein