PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164905.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 328aa    MW: 36613 Da    PI: 8.0797
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.38.1e-16243268126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG C+yGd+C+FaHg
  XP_019164905.1 243 FKTELCNKWQETGACPYGDNCQFAHG 268
                     79***********************9 PP

2zf-CCCH17.47.9e-06281306126
                     --S---SGGGGTS.--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                     ykte Cr  +  G  C+yG rC+F H+
  XP_019164905.1 281 YKTEVCRMVLN-GdPCPYGHRCHFRHS 306
                     9******9999.55**********998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MEYDLLSSPS FLSQASNASF DFNSLYNSIM FPQNSLLIGE SSSGGESQAL EATTSGIPHS  60
QLLIDQQYHR DLMDRHNAVL AHLRETAKQA QALRQENINL KMANRDLNNR LTLLLKASSD  120
YAAKFGAPSK FGMRRKSVPV GDDESTSQGQ LWEDMGATSS GDCHESPTSV MDSGRVERNN  180
VDRVLLPKSI SVRSSGYLKT AQASGSRPEN RPKASHTAQR VYLKGAKKEE QPLELEVYNQ  240
GMFKTELCNK WQETGACPYG DNCQFAHGLE ELRPVLRHPR YKTEVCRMVL NGDPCPYGHR  300
CHFRHSLSDQ EKLIRALNSR SLNSSLTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.17e-63C3H family protein