PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019164905.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 328aa MW: 36613 Da PI: 8.0797 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 49.3 | 8.1e-16 | 243 | 268 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd+C+FaHg XP_019164905.1 243 FKTELCNKWQETGACPYGDNCQFAHG 268 79***********************9 PP | |||||||
2 | zf-CCCH | 17.4 | 7.9e-06 | 281 | 306 | 1 | 26 |
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 ykte Cr + G C+yG rC+F H+ XP_019164905.1 281 YKTEVCRMVLN-GdPCPYGHRCHFRHS 306 9******9999.55**********998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence |
MEYDLLSSPS FLSQASNASF DFNSLYNSIM FPQNSLLIGE SSSGGESQAL EATTSGIPHS 60 QLLIDQQYHR DLMDRHNAVL AHLRETAKQA QALRQENINL KMANRDLNNR LTLLLKASSD 120 YAAKFGAPSK FGMRRKSVPV GDDESTSQGQ LWEDMGATSS GDCHESPTSV MDSGRVERNN 180 VDRVLLPKSI SVRSSGYLKT AQASGSRPEN RPKASHTAQR VYLKGAKKEE QPLELEVYNQ 240 GMFKTELCNK WQETGACPYG DNCQFAHGLE ELRPVLRHPR YKTEVCRMVL NGDPCPYGHR 300 CHFRHSLSDQ EKLIRALNSR SLNSSLTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 7e-63 | C3H family protein |