PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164768.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 369aa MW: 41997 Da PI: 5.2415

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.7	1e-34	47	138	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d+ +++++sws+ g+sfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ e+ weF+++ F +g++++l++ XP_019164768.1 47 FLIKTYDMVDDPGTNRVVSWSRGGHSFVVWDPHAFSTNLLPRFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEAFLRGNRHMLKN 132 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+rk++ XP_019164768.1 133 IRRKRT 138 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MDLVYHVKEE YPAGSSSSAG GGGGGDPVVI PPPQPMEGLH DIGPPPFLIK TYDMVDDPGT 60 NRVVSWSRGG HSFVVWDPHA FSTNLLPRFF KHNNFSSFVR QLNTYGFRKI DPERWEFANE 120 AFLRGNRHML KNIRRKRTPS SQPVPAHQAH AVGPCVEVGR FGVEIDAEVD GLRRDKQVLM 180 MELVKLRQQQ QTTRAYLRAM EVRLQGTERK QQQMMNFLAR AMQNPEFLQQ LLAQKEKRRE 240 LEDAITKKRR RPIDQGPSDS RAAAAIKPEP LELSNGDPYG FQVSELEALA LEMQGYGRAR 300 REIEEEEEND DHGFEQFQSE SSYKELDEGF WQDFFNEGFD EALKEEGEEG DVNVLADRLG 360 FLGSNSSPK

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MDLVYHVKEE YPAGSSSSAG GGGGGDPVVI PPPQPMEGLH DIGPPPFLIK TYDMVDDPGT  60
NRVVSWSRGG HSFVVWDPHA FSTNLLPRFF KHNNFSSFVR QLNTYGFRKI DPERWEFANE  120
AFLRGNRHML KNIRRKRTPS SQPVPAHQAH AVGPCVEVGR FGVEIDAEVD GLRRDKQVLM  180
MELVKLRQQQ QTTRAYLRAM EVRLQGTERK QQQMMNFLAR AMQNPEFLQQ LLAQKEKRRE  240
LEDAITKKRR RPIDQGPSDS RAAAAIKPEP LELSNGDPYG FQVSELEALA LEMQGYGRAR  300
REIEEEEEND DHGFEQFQSE SSYKELDEGF WQDFFNEGFD EALKEEGEEG DVNVLADRLG  360
FLGSNSSPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	251	KRRELEDAITKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-129	HSF family protein