PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164675.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 453aa MW: 49143.9 Da PI: 5.8055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164675.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.7e-09	269	317	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_019164675.1 269 NSHSLAERVRREKISERMKFLQDLVPGC----NKVIGKAVMLDEIINYVQSLQ 317 58***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MDHMDEFEAE RRADDDDGGV NLFNSSNMNT ANLGMGMVPN SNPSIDSFCS AIWDQPNPVN 60 HLVLGLGDAN NVEFEPSRIS GGNGSFGVPP NGMLKGSTLL PPAVPGLLPP PRFLPHFQVD 120 SDFVERAARF SCFGGGNVMN PFNTLECINA HSKGLAPPPQ TQRPREALVG NGLKNESLPI 180 GHNFAEEAKE RAGVSEAESD GLECLSESAV GQSSAKGLGS KKRKRRGQGA ELDQNKREPG 240 NDDKQGSQTS DTPKDEYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCNKVI 300 GKAVMLDEII NYVQSLQRQV EFLSMKLATI NPGLDFNSDV VFTKEISRAA SSSSSLAFPP 360 DMAMPYPPIH SPQPMLIQGG LPGLENSTVA LHRTINSQLP NTSETNKDHP TSKVSNTWSE 420 FHNVFQMGFN STAPLSSQFT SSLPPPDLTK TEP

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MDHMDEFEAE RRADDDDGGV NLFNSSNMNT ANLGMGMVPN SNPSIDSFCS AIWDQPNPVN  60
HLVLGLGDAN NVEFEPSRIS GGNGSFGVPP NGMLKGSTLL PPAVPGLLPP PRFLPHFQVD  120
SDFVERAARF SCFGGGNVMN PFNTLECINA HSKGLAPPPQ TQRPREALVG NGLKNESLPI  180
GHNFAEEAKE RAGVSEAESD GLECLSESAV GQSSAKGLGS KKRKRRGQGA ELDQNKREPG  240
NDDKQGSQTS DTPKDEYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCNKVI  300
GKAVMLDEII NYVQSLQRQV EFLSMKLATI NPGLDFNSDV VFTKEISRAA SSSSSLAFPP  360
DMAMPYPPIH SPQPMLIQGG LPGLENSTVA LHRTINSQLP NTSETNKDHP TSKVSNTWSE  420
FHNVFQMGFN STAPLSSQFT SSLPPPDLTK TEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	226	KKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	9e-64	bHLH family protein