PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019164507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 116aa MW: 12889.6 Da PI: 4.336 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43 | 5.6e-14 | 10 | 54 | 7 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHH.HT-EEEEEEE-TTSEEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvL.Cdaevaviifsstgklyeys 50 + r+v f+kRr+ ++KKA EL vL ++++a ++fs+ g+ly ++ XP_019164507.1 10 RARNVCFTKRRKRLFKKAAELGVLfPEVRIAAVVFSPAGNLYVFC 54 5699********************559***************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence |
MGLSSANKGR ARNVCFTKRR KRLFKKAAEL GVLFPEVRIA AVVFSPAGNL YVFCDVSEME 60 KLLAMDEPSA LLTEETENGE EENAHSSPVV EITLQEITGD FDGLDEEGFI NQFLNF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.2 | 1e-09 | MIKC_MADS family protein |