PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164234.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 728aa MW: 79476.4 Da PI: 5.4549

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00033	526	563	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a K s + Le+A++++ Lq XP_019164234.1 526 RQMIQDRLKELREIVPNgA------KCSIDSLLERAIKHMLFLQ 563 77899**********77......777778*******9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence
MMMENQFKVV GEGLAGRAAV TGHHHWILSQ GNSREAYPLE VLKELSQQFS AGIETIAVIP 60 VLPHGVVQLG SYNVVMENMV FVNNVRMAIC ELGCIPGVLL SGEDAMREPG VPIHVGNSIC 120 EDFVGGSKVL DSVPIAYRNS ETNLVLSEMH VGHQTCSSFV RQNTGDLCSS DATFGDARYS 180 PSFVEYHDDD HCQSKARPNF PPSNPNHWSN QHAYFYVPGP PSRQQSPFES MMVPDRIENS 240 VVPPSVGANQ VCNGVEMHPK SSPVLDSSSS GAVNDLLLAT HPSSAGFELD GIRGMEENDL 300 FQALGIHNEN LSSSPPKCIP DFSYDVKHEY DNTFFQDHSG DDLFDILGAD FKNKLLNGNW 360 NDFQSSGQDT ITMDMSKNPS TSMISKDASS TVNQGKSVDH LFDSLAAKKS VDDNVSCWTT 420 VTNMSSSSGP TASGSYGQVS MPVEIHGGLV GFPRSLTDSA IMGSCSFGSE SSKETAGAFL 480 HSSSIYGSQM STSVSTAQSK KHDETSKTSR KRLKPGENPR PRPKDRQMIQ DRLKELREIV 540 PNGAKCSIDS LLERAIKHML FLQSIAKHAD KLKQIGELKI ISTDGGLCLK DNFDGGATWA 600 YEVGSQSMVC PIIIEDLNQP RQMLVKMLCE ERGLFLEIAD VIRGLGLTIL IGVIETRNQK 660 IWARFAVEAN RDVTRMEIFV SLVRLLEQTT ATNGAEPSNA NEIEPVKDHQ FNHGAPIPTT 720 TGQARMLQ

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence

MMMENQFKVV GEGLAGRAAV TGHHHWILSQ GNSREAYPLE VLKELSQQFS AGIETIAVIP  60
VLPHGVVQLG SYNVVMENMV FVNNVRMAIC ELGCIPGVLL SGEDAMREPG VPIHVGNSIC  120
EDFVGGSKVL DSVPIAYRNS ETNLVLSEMH VGHQTCSSFV RQNTGDLCSS DATFGDARYS  180
PSFVEYHDDD HCQSKARPNF PPSNPNHWSN QHAYFYVPGP PSRQQSPFES MMVPDRIENS  240
VVPPSVGANQ VCNGVEMHPK SSPVLDSSSS GAVNDLLLAT HPSSAGFELD GIRGMEENDL  300
FQALGIHNEN LSSSPPKCIP DFSYDVKHEY DNTFFQDHSG DDLFDILGAD FKNKLLNGNW  360
NDFQSSGQDT ITMDMSKNPS TSMISKDASS TVNQGKSVDH LFDSLAAKKS VDDNVSCWTT  420
VTNMSSSSGP TASGSYGQVS MPVEIHGGLV GFPRSLTDSA IMGSCSFGSE SSKETAGAFL  480
HSSSIYGSQM STSVSTAQSK KHDETSKTSR KRLKPGENPR PRPKDRQMIQ DRLKELREIV  540
PNGAKCSIDS LLERAIKHML FLQSIAKHAD KLKQIGELKI ISTDGGLCLK DNFDGGATWA  600
YEVGSQSMVC PIIIEDLNQP RQMLVKMLCE ERGLFLEIAD VIRGLGLTIL IGVIETRNQK  660
IWARFAVEAN RDVTRMEIFV SLVRLLEQTT ATNGAEPSNA NEIEPVKDHQ FNHGAPIPTT  720
TGQARMLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	8e-53	bHLH family protein