PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163950.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 555aa MW: 60180.8 Da PI: 5.2288

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6.1e-18	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_019163950.1 39 KGPWTSAEDAILVDYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	49.5	9.9e-16	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ XP_019163950.1 92 KGSFTPEEEGRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MSMTSESEDR MTFKGSVSSP SIEEATAGGK TGGSVLLKKG PWTSAEDAIL VDYVTKHGEG 60 NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGSFTPEEE GRIIELHAKM GNKWARMAAE 120 LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DLCLKSINAS KQNGDMNIFS IGDMQHPDLF 180 QINCFEIPAV EFKNLELNQH SYPPPALVDI PASSLLDIPS SSLVGQGLKS SCGNRYFQST 240 VHPSKRLRGT ETLFPGLSDN GSDFLPACSR FQSGNSAAAY IAAAQSFGVS SAYNQNLASD 300 DPSLLSVIPG SHATLNGNSS YSSEPSWEKK PELPSLQSQM GSWYSPSSSP LPSLESIDTL 360 IQSPPPTEHT ESGSLSPRNS GLLDAVLYES QTLKHSKNNN TSSQQTTSDA SIIRGSIVDN 420 SCPDLHDTEW EAYGDPISPY GHSSASVFSE YTPAVNLDEA QTVVAGCKVK QEEEGMELSP 480 MQCGDTGRDD EESFQNMFSS CFGSQNHCVL KEVFGAVLLD DFSSRDCKNM RTISMATATS 540 SGGSPCAWDH AMSTV

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MSMTSESEDR MTFKGSVSSP SIEEATAGGK TGGSVLLKKG PWTSAEDAIL VDYVTKHGEG  60
NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGSFTPEEE GRIIELHAKM GNKWARMAAE  120
LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DLCLKSINAS KQNGDMNIFS IGDMQHPDLF  180
QINCFEIPAV EFKNLELNQH SYPPPALVDI PASSLLDIPS SSLVGQGLKS SCGNRYFQST  240
VHPSKRLRGT ETLFPGLSDN GSDFLPACSR FQSGNSAAAY IAAAQSFGVS SAYNQNLASD  300
DPSLLSVIPG SHATLNGNSS YSSEPSWEKK PELPSLQSQM GSWYSPSSSP LPSLESIDTL  360
IQSPPPTEHT ESGSLSPRNS GLLDAVLYES QTLKHSKNNN TSSQQTTSDA SIIRGSIVDN  420
SCPDLHDTEW EAYGDPISPY GHSSASVFSE YTPAVNLDEA QTVVAGCKVK QEEEGMELSP  480
MQCGDTGRDD EESFQNMFSS CFGSQNHCVL KEVFGAVLLD DFSSRDCKNM RTISMATATS  540
SGGSPCAWDH AMSTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	2e-85	MYB family protein