PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163704.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 250aa MW: 26023.3 Da PI: 9.2431

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.2	1.2e-37	30	113	3	87
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsss 87 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + s +s+s++ XP_019163704.1 30 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStiS---ASLRTSSSTA 113 79******************************************************************877532...2222221111 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MSTSVEANAG ALIDPQQLPS AGNGSLAVVV KKPPAKDRHS KVDGRGRRIR MPIVCAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTIPASFS TISASLRTSS STAPSLSASF 120 DHKPMAPAPF ILGKRLRAEE DGLDDGGNKE DVAGAATVVG SAAAGFWALP ARPDFGQVWS 180 FAAAAPHEMA VPTTAAAALN SRFFQQQMGE ASAARVGNYL PMAQGHLNLL ASLSGTPPPS 240 SGRRDDDDAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-76	TCP family protein